(Q30873635)

27 June 2017

1 reference

title

Protein fold recognition using sequence profiles and its application in structural genomics (English)

1 reference

27 June 2017

0 references

1 reference

1

Koonin EV

1 reference

27 June 2017

Wolf YI

2

1 reference

27 June 2017

Aravind L

series ordinal

3

1 reference

27 June 2017

publication date

1 January 2000

1 reference

Advances in Protein Chemistry

27 June 2017

published in

1 reference

27 June 2017

volume

54

1 reference

27 June 2017

page(s)

245-275

1 reference

Crystal structure of the RNA-binding domain from transcription termination factor rho

27 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Issues in searching molecular sequence databases

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Local alignment statistics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The HD domain defines a new superfamily of metal-dependent phosphohydrolases

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Phosphoesterase domains associated with DNA polymerases of diverse origins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Substitution matrices and hidden Markov models.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Transformation of MutL by ATP binding and hydrolysis: a switch in DNA mismatch repair

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Crystal structure and ATPase activity of MutL: implications for DNA repair and mutagenesis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

An atypical topoisomerase II from Archaea with implications for meiotic recombination

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Structure of CheA, a signal-transducing histidine kinase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Predicting functions from protein sequences--where are the bottlenecks?

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Statistics of sequence-structure threading

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The V(D)J recombination activating protein RAG2 consists of a six-bladed propeller and a PHD fingerlike domain, as revealed by sequence analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The crystal structures of T. thermophilus lysyl-tRNA synthetase complexed with E. coli tRNA(Lys) and a T. thermophilus tRNA(Lys) transcript: anticodon recognition and conformational changes upon binding of a lysyl-adenylate analogue

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Phylogenetic classification and the universal tree

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Profile hidden Markov models

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Maximum discrimination hidden Markov models of sequence consensus

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Protein structural classes in five complete genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Structural genomics taking shape

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Structural genomics: bioinformatics in the driver's seat

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Structure prediction in a post-genomic environment: a secondary and tertiary structural model for the initiation factor 5A family

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Comparing genomes in terms of protein structure: surveys of a finite parts list.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Three-dimensional structure of the catalytic subunit of protein serine/threonine phosphatase-1

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Estimating the total number of protein folds

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Translational initiation factors IF-1 and eIF-2α share an RNA-binding motif with prokaryotic ribosomal protein S1 and polynucleotide phosphorylase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Identification of sequence pattern with profile analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Two crystal forms of ModE, the molybdate-dependent transcriptional regulator from Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Scores for sequence searches and alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Mapping the protein universe

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

New structure--novel fold?

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The premature ageing syndrome protein, WRN, is a 3'-->5' exonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

SCOP: a Structural Classification of Proteins database.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Homology-based fold predictions for Mycoplasma genitalium proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Crystal structure of a free radical enzyme, galactose oxidase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Statistical methods and insights for protein and DNA sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Shining a light on structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Crystal structure of Thermus aquaticus DNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

A hidden Markov model that finds genes in E. coli DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The protein threading problem with sequence amino acid interaction preferences is NP-complete

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Ligand size is a major determinant of specificity in periplasmic oxyanion-binding proteins: the 1.2 A resolution crystal structure of Azotobacter vinelandii ModA

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Threading analysis suggests that the obese gene product may be a helical cytokine

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The current state of the art in protein structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Critical assessment of methods of protein structure prediction (CASP): Round II

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

How far divergent evolution goes in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Structural classification of proteins: new superfamilies

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Distant homology recognition using structural classification of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

From protein structure to function.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Fold and function predictions for Mycoplasma genitalium proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Functional insights from structural predictions: analysis of the Escherichia coli genome.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

100,000 protein structures for the biologist

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Advances in comparative protein-structure modelling

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The allosteric ligand site in the Vmax-type cooperative enzyme phosphoglycerate dehydrogenase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Transcriptional regulation of molybdoenzyme synthesis in Escherichia coli in response to molybdenum: ModE-molybdate, a repressor of the modABCD (molybdate transport) operon is a secondary transcriptional activator for the hyc and nar operons

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

The Argonne Structural Genomics Workshop: Lamaze class for the birth of a new science

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Structure prediction: The state of the art.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Structure of the adenylation domain of an NAD+-dependent DNA ligase

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Current limitations to protein threading approaches

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Crystal structure of an Hsp90-geldanamycin complex: targeting of a protein chaperone by an antitumor agent

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Advances in structural genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

ADE-4: a multivariate analysis and graphical display software

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

Crystal structure of an N-terminal fragment of the DNA gyrase B protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954008-X

7 January 2021

10.1016/S0065-3233(00)54008-X

Identifiers

DOI

1 reference

27 June 2017

1 reference