(Q30783186)

22 August 2017

1 reference

title

spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data (English)

1 reference

alternative mRNA splicing, via spliceosome

22 August 2017

0 references

1 reference

1 reference

1 reference

3

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Kristoffer Vitting-Seerup

Kristoffer Vitting-Seerup

series ordinal

1

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Johannes Waage

Johannes Waage

series ordinal

4

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Bo Torben Porse

Bo Torben Porse

series ordinal

2

0 references

language of work or name

1 reference

23 March 2014

1 reference

22 August 2017

1 reference

22 August 2017

15

1 reference

22 August 2017

81

1 reference

PMC publication ID

3998036

describes a project that uses

22 August 2017

1 reference

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3998036

based on heuristic

inferred from PubMed Central ID database lookup

edgeR

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

Mammalian tissues defective in nonsense-mediated mRNA decay display highly aberrant splicing patterns

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

KISSPLICE: de-novo calling alternative splicing events from RNA-seq data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

Detection, annotation and visualization of alternative splicing from RNA-Seq data with SplicingViewer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

The Pfam protein families database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

Analysis and design of RNA sequencing experiments for identifying isoform regulation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

Differential expression analysis for sequence count data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

Bioconductor: open software development for computational biology and bioinformatics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

The evolutionary landscape of alternative splicing in vertebrate species

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-15-81

Evaluation of gene structure prediction programs.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3998036

25 November 2018

Identifiers

DOI

10.1186/1471-2105-15-81

1 reference

journals/bmcbi/Vitting-SeerupPSW14

22 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

3998036

22 August 2017

PubMed publication ID

24655717

1 reference

PMC publication ID

3998036