(Q34147120)

31 July 2017

title

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data (English)

1 reference

alternative mRNA splicing, via spliceosome

31 July 2017

1 reference

1 reference

1 reference

Asa Ben-Hur

4

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author name string

Mark F Rogers

series ordinal

1

1 reference

31 July 2017

Julie Thomas

series ordinal

2

1 reference

31 July 2017

Anireddy Sn Reddy

series ordinal

3

1 reference

31 July 2017

publication date

31 January 2012

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31 July 2017

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31 July 2017

volume

13

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31 July 2017

issue

1

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31 July 2017

page(s)

R4

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2012-13-1-r4

31 July 2017

exact match

0 references

cites work

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

1 reference

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5 July 2018

1 reference

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

5 July 2018

1 reference

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5 July 2018

1 reference

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5 July 2018

1 reference

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5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

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5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Alternative splicing of pre-messenger RNAs in plants in the genomic era.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Different levels of alternative splicing among eukaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Genomewide comparative analysis of alternative splicing in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Function of alternative splicing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

The multiassembly problem: reconstructing multiple transcript isoforms from EST fragment mixtures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

BLAT—The BLAST-Like Alignment Tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

dbEST--database for "expressed sequence tags"

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

PASS: a program to align short sequences.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Detecting alternative gene structures from spliced ESTs: a computational approach

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Sircah: a tool for the detection and visualization of alternative transcripts.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

RASE: recognition of alternatively spliced exons in C.elegans.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Splicing graphs and EST assembly problem

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

RNA-Seq Read Alignments with PALMapper

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3334585

Genome-wide analysis of alternative splicing evolution among Mus subspecies

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22293517

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2012-13-1-R4

1 reference

Dimensions Publication ID

31 July 2017

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1 reference

31 July 2017

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