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Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs.
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Europe PubMed Central
PubMed publication ID
24894044
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24894044%20AND%20SRC:MED&resulttype=core&format=json
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19 March 2020
meta-analysis
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title
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs
(English)
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Europe PubMed Central
PubMed publication ID
24894044
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24894044%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
main subject
Arabidopsis thaliana
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phosphorylation
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based on heuristic
litr
meta-analysis
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based on heuristic
litr
author
Klaas J van Wijk
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1
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Europe PubMed Central
PubMed publication ID
24894044
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19 March 2020
Dirk Walther
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3
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24894044
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19 March 2020
Waltraud Schulze
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4
object named as
Waltraud X Schulze
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24894044
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19 March 2020
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Giulia Friso
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2
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PubMed publication ID
24894044
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19 March 2020
publication date
3 June 2014
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PubMed publication ID
24894044
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19 March 2020
number of pages
23
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The Plant Cell
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Europe PubMed Central
PubMed publication ID
24894044
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19 March 2020
volume
26
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24894044
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19 March 2020
issue
6
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24894044
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19 March 2020
page(s)
2367-2389
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Europe PubMed Central
PubMed publication ID
24894044
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19 March 2020
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Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks
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A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis
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25 November 2018
Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.
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25 November 2018
Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.
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25 November 2018
Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis
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25 November 2018
Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases
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25 November 2018
Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes
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25 November 2018
Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.
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25 November 2018
Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
NetworKIN: a resource for exploring cellular phosphorylation networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Reproducible isolation of distinct, overlapping segments of the phosphoproteome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Reading protein modifications with interaction domains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
The importance of intrinsic disorder for protein phosphorylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Arabidopsis kinome: after the casting.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Growth signalling pathways in Arabidopsis and the AGC protein kinases.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Signaling through scaffold, anchoring, and adaptor proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Quantitative Phosphoproteomics of Early Elicitor Signaling inArabidopsis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4114939
retrieved
25 November 2018
Phylogenetic and functional features of the plastid transcription kinase cpCK2 from Arabidopsis signify a role of cysteinyl SH-groups in regulatory phosphorylation of plastid sigma factors
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24894044
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Temporal Analysis of Sucrose-induced Phosphorylation Changes in Plasma Membrane Proteins ofArabidopsis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24894044
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A comprehensive differential proteomic study of nitrate deprivation in Arabidopsis reveals complex regulatory networks of plant nitrogen responses
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24894044
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1105/TPC.114.125815
1 reference
stated in
Europe PubMed Central
PubMed publication ID
24894044
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24894044%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
PMC publication ID
4114939
0 references
PubMed publication ID
24894044
1 reference
stated in
Europe PubMed Central
PubMed publication ID
24894044
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24894044%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
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