(Q30850486)

18 October 2017

Elucidation of quantitative structural diversity of remarkable rearrangement regions, shufflons, in IncI2 plasmids (English)

1 reference

18 October 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Akifumi Yamashita

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

4

Ayaka Shima

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

author name string

Michiko Kawanishi

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Mamoru Ohnishi

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Kengo Kato

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Mari Matsui

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Satowa Suzuki

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Makoto Kuroda

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

language of work or name

English

0 references

publication date

19 April 2017

1 reference

18 October 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

page(s)

928

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

7 June 2020

copyright license

start time

19 April 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

mcr-1.2, a New mcr Variant Carried on a Transferable Plasmid from a Colistin-Resistant KPC Carbapenemase-Producing Klebsiella pneumoniae Strain of Sequence Type 512.

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Full-Length Nucleotide Sequences of mcr-1-Harboring Plasmids Isolated from Extended-Spectrum-β-Lactamase-Producing Escherichia coli Isolates of Different Origins.

21 June 2018

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Escherichia coli Harboring mcr-1 and bla CTX-M on a Novel IncF Plasmid: First Report of mcr-1 in the United States

21 June 2018

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Complete Nucleotide Sequence of an IncI2 Plasmid Coharboring blaCTX-M-55 and mcr-1

21 June 2018

1 reference

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Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study

21 June 2018

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VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on

21 June 2018

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PacBio Sequencing and Its Applications

21 June 2018

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An integrated map of structural variation in 2,504 human genomes

21 June 2018

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Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

21 June 2018

1 reference

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IncI shufflons: Assembly issues in the next-generation sequencing era.

21 June 2018

1 reference

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Assessing structural variation in a personal genome-towards a human reference diploid genome.

21 June 2018

1 reference

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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

21 June 2018

1 reference

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A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

21 June 2018

1 reference

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Functional genomics to identify the factors contributing to successful persistence and global spread of an antibiotic resistance plasmid

21 June 2018

1 reference

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Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing

21 June 2018

1 reference

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Prokka: rapid prokaryotic genome annotation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

InterProScan 5: genome-scale protein function classification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Genomic approaches to studying the human microbiota

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Comparison of next-generation sequencing systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Identification of acquired antimicrobial resistance genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Microbial antigenic variation mediated by homologous DNA recombination

21 June 2018

1 reference

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Therapeutic options for infections with Enterobacteriaceae producing carbapenem-hydrolyzing enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities

21 June 2018

1 reference

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Easyfig: a genome comparison visualizer

21 June 2018

1 reference

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Interactive microbial genome visualization with GView

21 June 2018

1 reference

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Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

21 June 2018

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

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Next generation sequencing of microbial transcriptomes: challenges and opportunities.

21 June 2018

1 reference

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Circos: an information aesthetic for comparative genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Application of 'next-generation' sequencing technologies to microbial genetics

21 June 2018

1 reference

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Next-generation DNA sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Advanced sequencing technologies and their wider impact in microbiology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

N6-methyl-adenine: an epigenetic signal for DNA-protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Thin pilus PilV adhesins of plasmid R64 recognize specific structures of the lipopolysaccharide molecules of recipient cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Purification and characterization of the R64 shufflon-specific recombinase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

A whole-genome assembly of Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Analysis of DNA inversions in the shufflon of plasmid R64.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Highly mobile DNA segment of IncI alpha plasmid R64: a clustered inversion region

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Shufflon: multi-inversion of four contiguous DNA segments of plasmid R64 creates seven different open reading frames

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Physical and genetic analyses of IncI2 plasmid R721: evidence for the presence of shufflon.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5430464

Sequence-specific and non-specific binding of the Rci protein to the asymmetric recombination sites of the R64 shufflon

21 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-01082-Y

PilV adhesins of plasmid R64 thin pili specifically bind to the lipopolysaccharides of recipient cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-01082-Y

Investigation of a plasmid genome database for colistin-resistance gene mcr-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-01082-Y

Complete sequence of an IncFII plasmid harbouring the colistin resistance gene mcr-1 isolated from Belgian pig farms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-01082-Y

Colistin resistance gene mcr-1 harboured on a multidrug resistant plasmid.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-01082-Y

Co-occurrence of mcr-1 and ESBL on a single plasmid in Salmonella enterica.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-01082-Y

Emergence of the mcr-1 colistin resistance gene in carbapenem-resistant Enterobacteriaceae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-01082-Y

Dissemination of the mcr-1 colistin resistance gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-01082-Y

Colistin resistance in Salmonella and Escherichia coli isolates from a pig farm in Great Britain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-01082-Y

Asymmetry of shufflon-specific recombination sites in plasmid R64 inhibits recombination between direct sfx sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28424528

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The lipopolysaccharide of recipient cells is a specific receptor for PilV proteins, selected by shufflon DNA rearrangement, in liquid matings with donors bearing the R64 plasmid

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28424528

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/S41598-017-01082-Y

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

7 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28424528%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

PubMed publication ID

28424528

1 reference