(Q37848918)

24 August 2017

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title

Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities (English)

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24 August 2017

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Hikaru Suenaga

1

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24 August 2017

publication date

1 March 2011

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Environmental Microbiology

24 August 2017

published in

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24 August 2017

volume

14

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24 August 2017

issue

1

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24 August 2017

page(s)

13-22

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Fine-scale phylogenetic architecture of a complex bacterial community.

24 August 2017

cites work

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Comparative Analysis of Bacillus anthracis, Bacillus cereus, and Related Species on the Basis of Reverse Transcriptase Sequencing of 16S rRNA

21 January 2018

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Magnetosome formation in prokaryotes

21 January 2018

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Functional metaproteome analysis of protein extracts from contaminated soil and groundwater

21 January 2018

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Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Cultivating previously uncultured soil bacteria using a soil substrate membrane system

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

21 January 2018

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Bioinformatics for whole-genome shotgun sequencing of microbial communities

21 January 2018

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Continuous base identification for single-molecule nanopore DNA sequencing

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

A metagenomic survey of microbes in honey bee colony collapse disorder

21 January 2018

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Community genomics among stratified microbial assemblages in the ocean's interior

21 January 2018

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Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach.

21 January 2018

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Identification of a complete methane monooxygenase operon from soil by combining stable isotope probing and metagenomic analysis

21 January 2018

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

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Using pyrosequencing to shed light on deep mine microbial ecology

21 January 2018

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Real-time DNA sequencing from single polymerase molecules

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Evolutionary relationships among extradiol dioxygenases

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Biological degradation of 2,4,6-trinitrotoluene

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Magnetotactic bacteria and magnetosomes

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora.

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Biphenyl dioxygenases: functional versatilities and directed evolution

21 January 2018

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A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Metagenomic analysis of the human distal gut microbiome

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Comparative genomics of DNA fragments from six Antarctic marine planktonic bacteria

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Evaluation of next generation sequencing platforms for population targeted sequencing studies

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

The effect of sequencing errors on metagenomic gene prediction

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Toward cloning of the magnetotactic metagenome: identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

High-resolution metagenomics targets specific functional types in complex microbial communities.

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Tetracycline resistome of the organic pig gut

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

ARB: a software environment for sequence data

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

The impact of next-generation sequencing technology on genetics

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Metaproteomics: a new approach for studying functional microbial ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

The I-CeuI endonuclease recognizes a sequence of 19 base pairs and preferentially cleaves the coding strand of the Chlamydomonas moewusii chloroplast large subunit rRNA gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Metagenomic screening for bleomycin resistance genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Lateral gene transfer and phylogenetic assignment of environmental fosmid clones

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Use of ichip for high-throughput in situ cultivation of "uncultivable" microbial species

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Microbial ecology and evolution: a ribosomal RNA approach

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

The use of gene clusters to infer functional coupling

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Stable-isotope probing as a tool in microbial ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Unravelling the genetic diversity of ruminal bacteria belonging to the CFB phylum

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Metagenomics: genomic analysis of microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Activity and distribution of bacterial populations in Middle Atlantic Bight shelf sands

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Operons in Escherichia coli: genomic analyses and predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Isotopic evidence for microbial sulphate reduction in the early Archaean era.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Transcriptional activity of paddy soil bacterial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

New strategies for cultivation and detection of previously uncultured microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Role of multiple gene copies in particulate methane monooxygenase activity in the methane-oxidizing bacterium Methylococcus capsulatus Bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Metagenomics--the key to the uncultured microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

The molecular basis for adaptive evolution in novel extradiol dioxygenases retrieved from the metagenome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

An obesity-associated gut microbiome with increased capacity for energy harvest

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Community structure and metabolism through reconstruction of microbial genomes from the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Environmental genome shotgun sequencing of the Sargasso Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Metagenomics approaches in systems microbiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Metagenomic analysis of the microbial community associated with the coral Porites astreoides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Resolving functional diversity in relation to microbial community structure in soil: exploiting genomics and stable isotope probing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Metagenomics: read length matters

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

21 January 2018

A primer on metagenomics

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Cultivating the uncultured

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Estimating residue evolutionary conservation by introducing von Neumann entropy and a novel gap-treating approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

Mineralization of organic matter in the sea bed—the role of sulphate reduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02438.X

10.1111/J.1462-2920.2011.02438.X

21 January 2018

Identifiers

DOI

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24 August 2017

1 reference