(Q30858758)

16 October 2017

Ranking of binding and nonbinding peptides to MHC class I molecules using inverse folding approach: implications for vaccine design (English)

1 reference

16 October 2017

1 reference

Satarudra Prakash Singh

series ordinal

1

1 reference

PMC publication ID

2639678

16 October 2017

Bhartendu Nath Mishra

series ordinal

2

1 reference

16 October 2017

24 October 2008

1 reference

16 October 2017

1 reference

16 October 2017

3

1 reference

16 October 2017

2

1 reference

16 October 2017

72-82

1 reference

T-Epitope Designer: A HLA-peptide binding prediction server

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

MODPROPEP: a program for knowledge-based modeling of protein-peptide complexes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Computational methods for prediction of T-cell epitopes--a framework for modelling, testing, and applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

IMGT/3Dstructure-DB and IMGT/StructuralQuery, a database and a tool for immunoglobulin, T cell receptor and MHC structural data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Structure-based prediction of potential binding and nonbinding peptides to HIV-1 protease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

MHCPred: A server for quantitative prediction of peptide-MHC binding.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Optimizing vaccine design for cellular processing, MHC binding and TCR recognition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Epitope identification and vaccine design for cancer immunotherapy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Types of inter-atomic interactions at the MHC-peptide interface: identifying commonality from accumulated data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

21 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Knowledge-based structure prediction of MHC class I bound peptides: a study of 23 complexes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Free energy mapping of class I MHC molecules and structural determination of bound peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

The antigenic identity of peptide-MHC complexes: a comparison of the conformations of five viral peptides presented by HLA-A2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Ranking potential binding peptides to MHC molecules by a computational threading approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

A structure-based approach for prediction of MHC-binding peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639678

25 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/19238199

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.6026/97320630003072

1 reference

16 October 2017

1 reference

PMC publication ID

2639678

16 October 2017

PubMed publication ID

19238199

1 reference

PMC publication ID

2639678