(Q30868319)

27 June 2017

1 reference

title

Network inference from AP-MS data: computational challenges and solutions (English)

1 reference

27 June 2017

Ben Teng

1

1 reference

27 June 2017

Can Zhao

series ordinal

2

1 reference

27 June 2017

Xiaoqing Liu

series ordinal

3

1 reference

27 June 2017

Zengyou He

series ordinal

4

1 reference

27 June 2017

5 November 2014

1 reference

Briefings in Bioinformatics

27 June 2017

1 reference

27 June 2017

16

1 reference

27 June 2017

4

1 reference

27 June 2017

658-674

1 reference

The cell as a collection of protein machines: preparing the next generation of molecular biologists

27 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Interactome networks and human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

SAINT: probabilistic scoring of affinity purification-mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Global landscape of HIV-human protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Defining the human deubiquitinating enzyme interaction landscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Changes in the protein expression of yeast as a function of carbon source

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

A proteomic view of the Plasmodium falciparum life cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Reconstruction of cellular signal transduction networks using perturbation assays and linear programming.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Perturbation biology: inferring signaling networks in cellular systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

A comprehensive two-hybrid analysis to explore the yeast protein interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Protein complexes and functional modules in molecular networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Computational approaches for detecting protein complexes from protein interaction networks: a survey

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Challenges and rewards of interaction proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Computational detection of protein complexes in AP-MS experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Assignment of protein interactions from affinity purification/mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

An automated method for finding molecular complexes in large protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

A novel scoring approach for protein co-purification data reveals high interaction specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

From pull-down data to protein interaction networks and complexes with biological relevance

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

A protein complex network of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

PPIRank - an advanced method for ranking protein-protein interations in TAP/MS data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

A Bayesian estimator of protein-protein association probabilities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

A global protein kinase and phosphatase interaction network in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Construction of reliable protein–protein interaction networks with a new interaction generality measure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Sets2Networks: network inference from repeated observations of sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Predicting direct protein interactions from affinity purification mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

An efficient algorithm for large-scale detection of protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Development and implementation of an algorithm for detection of protein complexes in large interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Construction of co-complex score matrix for protein complex prediction from AP-MS data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Predicting protein complexes from PPI data: a core-attachment approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Discovery of protein complexes with core-attachment structures from Tandem Affinity Purification (TAP) data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Identification of protein complexes from co-immunoprecipitation data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Deconvolution of targeted protein-protein interaction maps.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

The MIPS mammalian protein-protein interaction database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

The BioGRID Interaction Database: 2011 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Development of human protein reference database as an initial platform for approaching systems biology in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

The IntAct molecular interaction database in 2010

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

The Database of Interacting Proteins: 2004 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

MINT, the molecular interaction database: 2012 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

HINT: High-quality protein interactomes and their applications in understanding human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Pre- and post-processing workflow for affinity purification mass spectrometry data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Network deconvolution as a general method to distinguish direct dependencies in networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

Network link prediction by global silencing of indirect correlations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBU038

21 January 2018

Identifiers

DOI

10.1093/BIB/BBU038

1 reference

27 June 2017

journals/bib/TengZLH15

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference