(Q30883144)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

title

MetaDB a Data Processing Workflow in Untargeted MS-Based Metabolomics Experiments (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

1 reference

1 reference

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Pietro Franceschi

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Panagiotis Arapitsas

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Silvia Carlin

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

9

Urska Vrhovsek

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

10

Fulvio Mattivi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

6

Domenico Masuero

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

3

Nir Shahaf

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

author name string

Roman Mylonas

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Matthias Scholz

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Georg Weingart

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

publication date

16 December 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

Frontiers in Bioengineering and Biotechnology

27 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

page(s)

72

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

Direct infusion mass spectrometry metabolomics dataset: a benchmark for data processing and quality control

27 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

High-throughput discovery metabolomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

A modified data normalization method for GC-MS-based metabolomics to minimize batch variation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

After the feature presentation: technologies bridging untargeted metabolomics and biology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Numerical compression schemes for proteomics mass spectrometry data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

metaMS: an open-source pipeline for GC-MS-based untargeted metabolomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Current practice of liquid chromatography-mass spectrometry in metabolomics and metabonomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Determination of antiprotozoal drug mechanisms by metabolomics approaches.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Metabolite profiling and beyond: approaches for the rapid processing and annotation of human blood serum mass spectrometry data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Recent progress in the development of metabolome databases for plant systems biology.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Normalizing and integrating metabolomics data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

A cross-platform toolkit for mass spectrometry and proteomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

An accelerated workflow for untargeted metabolomics using the METLIN database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

MSClust: a tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Scientific workflow systems: Pipeline Pilot and KNIME

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

XCMS Online: a web-based platform to process untargeted metabolomic data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Development of Ecom₅₀ and retention index models for nontargeted metabolomics: identification of 1,3-dicyclohexylurea in human serum by HPLC/mass spectrometry

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Innovation: Metabolomics: the apogee of the omics trilogy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Toward interoperable bioscience data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Liquid chromatography-mass spectrometry based global metabolite profiling: a review.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Toward global metabolomics analysis with hydrophilic interaction liquid chromatography-mass spectrometry: improved metabolite identification by retention time prediction

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Computing fragmentation trees from tandem mass spectrometry data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Evaluation of peak picking quality in LC-MS metabolomics data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Computational mass spectrometry for metabolomics: identification of metabolites and small molecules

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

mzML--a community standard for mass spectrometry data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

MassBank: a public repository for sharing mass spectral data for life sciences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

In silico fragmentation for computer assisted identification of metabolite mass spectra

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Galaxy: a web-based genome analysis tool for experimentalists

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Mass spectrometry tools and metabolite-specific databases for molecular identification in metabolomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

MetaboAnalyst: a web server for metabolomic data analysis and interpretation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

MetAlign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Web-based resources for mass-spectrometry-based metabolomics: a user's guide

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

ProteoWizard: open source software for rapid proteomics tools development

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

OpenMS - an open-source software framework for mass spectrometry

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

SetupX--a public study design database for metabolomic projects

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Data processing for mass spectrometry-based metabolomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

HMDB: the Human Metabolome Database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Galaxy: a platform for interactive large-scale genome analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

A common open representation of mass spectrometry data and its application to proteomics research

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4267269

Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics

14 July 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

Characterising and correcting batch variation in an automated direct infusion mass spectrometry (DIMS) metabolomics workflow

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

Systematic structural characterization of metabolites in Arabidopsis via candidate substrate-product pair networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

Automatic chemical structure annotation of an LC-MS(n) based metabolic profile from green tea.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

A pragmatic and readily implemented quality control strategy for HPLC-MS and GC-MS-based metabonomic analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

A metabolome pipeline: from concept to data to knowledge

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

Algorithms and tools for the preprocessing of LC–MS metabolomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

A proposed framework for the description of plant metabolomics experiments and their results

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

Metabolomics standards initiative: ontology working group work in progress

21 January 2018

1 reference

https://api.crossref.org/works/10.3389%2FFBIOE.2014.00072

Easy and accurate high-performance liquid chromatography retention prediction with different gradients, flow rates, and instruments by back-calculation of gradient and flow rate profiles

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25566535

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Optimizing the use of quality control samples for signal drift correction in large-scale urine metabolic profiling studies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25566535

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FBIOE.2014.00072

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25566535%20AND%20SRC:MED&resulttype=core&format=json