(Q36739441)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Recent progress in the development of metabolome databases for plant systems biology (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

author name string

Miyako Kusano

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

publication date

4 April 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

Frontiers in Plant Science

28 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

volume

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

page(s)

73

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

Medicinal plants: a public resource for metabolomics and hypothesis development.

28 February 2020

cites work

1 reference

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29 September 2017

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Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function"

29 September 2017

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29 September 2017

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Metabolite Identification Using Automated Comparison of High-Resolution Multistage Mass Spectral Trees

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Covering chemical diversity of genetically-modified tomatoes using metabolomics for objective substantial equivalence assessment

29 September 2017

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29 September 2017

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Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice.

29 September 2017

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29 September 2017

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Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Starch as a major integrator in the regulation of plant growth

29 September 2017

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29 September 2017

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Metabolic flux analysis in plants: coping with complexity

29 September 2017

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29 September 2017

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Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination

29 September 2017

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29 September 2017

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Metabolomics for functional genomics, systems biology, and biotechnology

29 September 2017

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Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics

29 September 2017

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HMDB: a knowledgebase for the human metabolome

29 September 2017

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MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

29 September 2017

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Search extension transforms Wiki into a relational system: a case for flavonoid metabolite database

29 September 2017

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MeltDB: a software platform for the analysis and integration of metabolomics experiment data

29 September 2017

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Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks

29 September 2017

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Time-resolved metabolomics reveals metabolic modulation in rice foliage

29 September 2017

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Metabolite annotations based on the integration of mass spectral information

29 September 2017

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Metabolic flux analysis in plants: from intelligent design to rational engineering.

29 September 2017

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ChEBI: a database and ontology for chemical entities of biological interest

29 September 2017

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LIPID MAPS online tools for lipid research

29 September 2017

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Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry

29 September 2017

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The metabolic signature related to high plant growth rate in Arabidopsis thaliana

29 September 2017

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A metabolomic study of substantial equivalence of field-grown genetically modified wheat

29 September 2017

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Plant metabolomics: from holistic hope, to hype, to hot topic.

29 September 2017

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Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops

29 September 2017

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KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps

29 September 2017

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MetaCyc and AraCyc. Metabolic pathway databases for plant research

29 September 2017

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GC-MS libraries for the rapid identification of metabolites in complex biological samples

29 September 2017

1 reference

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GMD@CSB.DB: the Golm Metabolome Database

29 September 2017

1 reference

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Differential metabolic networks unravel the effects of silent plant phenotypes

29 September 2017

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MetaGeneAlyse: analysis of integrated transcriptional and metabolite data

29 September 2017

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From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions

29 September 2017

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Systems biology: a brief overview

29 September 2017

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Metabolomics – the link between genotypes and phenotypes

29 September 2017

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29 September 2017

12 December 2020

Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Grand Challenges in Plant Systems Biology: Closing the Circle(s).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Combination of liquid chromatography-Fourier transform ion cyclotron resonance-mass spectrometry with 13C-labeling for chemical assignment of sulfur-containing metabolites in onion bulbs

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Untargeted metabolic quantitative trait loci analyses reveal a relationship between primary metabolism and potato tuber quality.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Chloroplast 2010: a database for large-scale phenotypic screening of Arabidopsis mutants.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

A genome-scale metabolic model of Arabidopsis and some of its properties

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Biochemical networks and epistasis shape the Arabidopsis thaliana metabolome

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

LC-MS/MS assay for protein amino acids and metabolically related compounds for large-scale screening of metabolic phenotypes

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Genetical metabolomics of flavonoid biosynthesis in Populus: a case study.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Exploring the temperature-stress metabolome of Arabidopsis

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Cyclosporin A-induced changes in endogenous metabolites in rat urine: a metabonomic investigation using high field 1H NMR spectroscopy, HPLC-TOF/MS and chemometrics

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Consensus Structure Elucidation Combining GC/EI-MS, Structure Generation, and Calculated Properties

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

The Metabolomics Standards Initiative

4 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling

4 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Gas chromatography mass spectrometry–based metabolite profiling in plants

4 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616245

Exploring Matrix Effects and Quantification Performance in Metabolomics Experiments Using Artificial Biological Gradients

4 December 2018

1 reference

12 December 2020

13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research

1 reference

12 December 2020

Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry

1 reference

12 December 2020

A liquid chromatography-mass spectrometry-based metabolome database for tomato

1 reference

12 December 2020

AtMetExpress development: a phytochemical atlas of Arabidopsis development

1 reference

12 December 2020

Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves

1 reference

12 December 2020

Recommendations for reporting metabolite data

1 reference

12 December 2020

Identifiers

DOI

10.3389/FPLS.2013.00073

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

23577015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23577015%20AND%20SRC:MED&resulttype=core&format=json