(Q30902292)

27 June 2017

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title

Reconstruction of genome-scale human metabolic models using omics data (English)

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27 June 2017

3

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27 June 2017

2

Hyun Uk Kim

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27 June 2017

Jae Yong Ryu

1

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27 June 2017

publication date

1 August 2015

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27 June 2017

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27 June 2017

volume

7

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27 June 2017

issue

8

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27 June 2017

page(s)

859-868

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What is flux balance analysis?

27 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Flux variability scanning based on enforced objective flux for identifying gene amplification targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Global reconstruction of the human metabolic network based on genomic and bibliomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Genome-scale modeling of human metabolism - a systems biology approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Compartmentalization of the Edinburgh Human Metabolic Network

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

A community-driven global reconstruction of human metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

A compendium of inborn errors of metabolism mapped onto the human metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Predicting the impact of diet and enzymopathies on human small intestinal epithelial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Integration of clinical data with a genome-scale metabolic model of the human adipocyte

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

KEGG for integration and interpretation of large-scale molecular data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Computational prediction of human metabolic pathways from the complete human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Update of the LIPID MAPS comprehensive classification system for lipids

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Building models using Reactome pathways as templates

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Predicting drug targets and biomarkers of cancer via genome-scale metabolic modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Large-scale in silico modeling of metabolic interactions between cell types in the human brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Drug off-target effects predicted using structural analysis in the context of a metabolic network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Reconstruction and analysis of human heart-specific metabolic network based on transcriptome and proteome data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

CardioNet: a human metabolic network suited for the study of cardiomyocyte metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Defining the human adipose tissue proteome to reveal metabolic alterations in obesity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Metabolic associations of reduced proliferation and oxidative stress in advanced breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Context-specific metabolic networks are consistent with experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Fast reconstruction of compact context-specific metabolic network models

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Phenotype-based cell-specific metabolic modeling reveals metabolic liabilities of cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Methods for integration of transcriptomic data in genome-scale metabolic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Recent advances in the reconstruction of metabolic models and integration of omics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Analysis of omics data with genome-scale models of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Systematizing the generation of missing metabolic knowledge

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Optimization based automated curation of metabolic reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

fastGapFill: efficient gap filling in metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Consistent estimation of Gibbs energy using component contributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Predicting network functions with nested patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

WoLF PSORT: protein localization predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Prediction of protein subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

BRENDA, the enzyme information system in 2011

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Towards a knowledge-based Human Protein Atlas

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Proteomics. Tissue-based map of the human proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Membrane transporters in a human genome-scale metabolic knowledgebase and their implications for disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

SMPDB 2.0: big improvements to the Small Molecule Pathway Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Reconciliation of metabolites and biochemical reactions for metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Path2Models: large-scale generation of computational models from biochemical pathway maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

APPRIS: annotation of principal and alternative splice isoforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

Reducing Recon 2 for steady-state flux analysis of HEK cell culture

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC5IB00002E

21 January 2018

Identifiers

DOI

10.1039/C5IB00002E

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27 June 2017

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