(Q30936220)

16 October 2017

Inferring dynamic gene regulatory networks in cardiac differentiation through the integration of multi-dimensional data (English)

1 reference

16 October 2017

0 references

Wuming Gong

1

1 reference

16 October 2017

Naoko Koyano-Nakagawa

series ordinal

2

1 reference

16 October 2017

Tongbin Li

series ordinal

3

1 reference

16 October 2017

Daniel J Garry

series ordinal

4

1 reference

16 October 2017

7 March 2015

1 reference

16 October 2017

1 reference

16 October 2017

16

1 reference

16 October 2017

74

1 reference

Creative Commons Attribution 4.0 International

16 October 2017

start time

7 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s12859-015-0460-0

0 references

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Super-enhancers in the control of cell identity and disease

21 June 2018

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RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts

21 June 2018

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21 June 2018

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Models incorporating chromatin modification data identify functionally important p53 binding sites

21 June 2018

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Inferring microRNA and transcription factor regulatory networks in heterogeneous data

21 June 2018

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21 June 2018

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Braveheart, a long noncoding RNA required for cardiovascular lineage commitment

21 June 2018

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DNA-binding specificities of human transcription factors

21 June 2018

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Essential and unexpected role of Yin Yang 1 to promote mesodermal cardiac differentiation

21 June 2018

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Reverse-engineering the genetic circuitry of a cancer cell with predicted intervention in chronic lymphocytic leukemia

21 June 2018

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ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data

21 June 2018

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Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation.

21 June 2018

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Epigenomic annotation of enhancers predicts transcriptional regulators of human neural crest

21 June 2018

1 reference

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A temporal chromatin signature in human embryonic stem cells identifies regulators of cardiac development

21 June 2018

1 reference

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Wisdom of crowds for robust gene network inference

21 June 2018

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SWI/SNF protein component BAF250a regulates cardiac progenitor cell differentiation by modulating chromatin accessibility during second heart field development

21 June 2018

1 reference

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Unsupervised pattern discovery in human chromatin structure through genomic segmentation

21 June 2018

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Generation of mouse ES cell lines engineered for the forced induction of transcription factors.

21 June 2018

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Large-scale discovery of enhancers from human heart tissue

21 June 2018

1 reference

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Quantitative analysis demonstrates most transcription factors require only simple models of specificity

21 June 2018

1 reference

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Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions

21 June 2018

1 reference

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A gene regulatory network controlling the embryonic specification of endoderm

21 June 2018

1 reference

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Mapping and analysis of chromatin state dynamics in nine human cell types

21 June 2018

1 reference

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Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.

21 June 2018

1 reference

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The cardiac transcription network modulated by Gata4, Mef2a, Nkx2.5, Srf, histone modifications, and microRNAs

21 June 2018

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A unique chromatin signature uncovers early developmental enhancers in humans

21 June 2018

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Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

21 June 2018

1 reference

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

21 June 2018

1 reference

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Statistical inference of the time-varying structure of gene-regulation networks

21 June 2018

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Regularization Paths for Generalized Linear Models via Coordinate Descent

21 June 2018

1 reference

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ChIP-Seq identification of weakly conserved heart enhancers

21 June 2018

1 reference

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Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

21 June 2018

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

21 June 2018

1 reference

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Community structure in time-dependent, multiscale, and multiplex networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Integrating multiple evidence sources to predict transcription factor binding in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Genome-wide prediction of transcription factor binding sites using an integrated model.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Genome-wide discovery of human heart enhancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Incorporating existing network information into gene network inference

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Recovering time-varying networks of dependencies in social and biological studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Histone modifications at human enhancers reflect global cell-type-specific gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

TopHat: discovering splice junctions with RNA-Seq

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

ChIP-seq accurately predicts tissue-specific activity of enhancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

BAF250B-associated SWI/SNF chromatin-remodeling complex is required to maintain undifferentiated mouse embryonic stem cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Distinct roles of Wnt/beta-catenin and Bmp signaling during early cardiogenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

MicroRNA-133 controls cardiac hypertrophy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Nodal signaling: developmental roles and regulation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Early growth response-1 in cardiovascular pathobiology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Baf60c is essential for function of BAF chromatin remodelling complexes in heart development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Genomic analysis of regulatory network dynamics reveals large topological changes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

RNA amplification and transcriptional profiling for analysis of stem cell populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Inferring gene networks from time series microarray data using dynamic Bayesian networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Inferring genetic networks and identifying compound mode of action via expression profiling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Complex modular cis-acting elements regulate expression of the cardiac specifying homeobox gene Csx/Nkx2.5.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Myogenic and morphogenetic defects in the heart tubes of murine embryos lacking the homeo box gene Nkx2-5

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0460-0

Transcriptional regulation of cardiac progenitor cell populations

21 January 2018

1 reference

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An empirical Bayes approach to inferring large-scale gene association networks.

21 January 2018

1 reference

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Predicting gene expression from sequence

21 January 2018

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SIRENE: supervised inference of regulatory networks

21 January 2018

1 reference

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Downstream of FGF during mesoderm formation in Xenopus: the roles of Elk-1 and Egr-1.

21 January 2018

1 reference

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RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis

21 January 2018

1 reference

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The Nuclear Receptor Nr5a2 Can Replace Oct4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0460-0

Control of early cardiac-specific transcription of Nkx2-5 by a GATA-dependent enhancer.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

A GATA-dependent nkx-2.5 regulatory element activates early cardiac gene expression in transgenic mice.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4359553

10.1186/S12859-015-0460-0

25 November 2018

Identifiers

DOI

1 reference

16 October 2017

journals/bmcbi/GongKLG15

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

16 October 2017

PubMed publication ID

25887857

1 reference