(Q31097580)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

title

Further evidence for the absence of polyproline II stretch in the XAO peptide (English)

1 reference

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Sylwia Rodziewicz-Motowidło

25 December 2019

author

2

1 reference

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25 December 2019

Mariusz Makowski

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Jorge Vila

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Lech Chmurzyński

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

6

Adam Liwo

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

author name string

Joanna Makowska

1

1 reference

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25 December 2019

Katarzyna Baginska

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Harold A Scheraga

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

language of work or name

English

0 references

publication date

2 February 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

number of pages

14

1 reference

inferred from page(s)

published in

Biophysical Journal

1 reference

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25 December 2019

volume

92

1 reference

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25 December 2019

issue

8

1 reference

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25 December 2019

page(s)

2904-2917

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

Conformation of the backbone in unfolded proteins.

25 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

A new force field (ECEPP-05) for peptides, proteins, and organic molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Assessment of two theoretical methods to estimate potentiometric titration curves of peptides: comparison with experiment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Polyproline II conformation is one of many local conformational states and is not an overall conformation of unfolded peptides and proteins.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Intrinsic backbone preferences are fully present in blocked amino acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Sterics and solvation winnow accessible conformational space for unfolded proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Unusual compactness of a polyproline type II structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Neighbor effect on PPII conformation in alanine peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Energy landscapes and solved protein-folding problems.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

The polyproline II conformation in short alanine peptides is noncooperative

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Random-coil behavior and the dimensions of chemically unfolded proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

UV Raman demonstrates that alpha-helical polyalanine peptides melt to polyproline II conformations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Polyproline II helix conformation in a proline-rich environment: a theoretical study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Dissection of human tropoelastin: exon-by-exon chemical synthesis and related conformational studies.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Is polyproline II a major backbone conformation in unfolded proteins?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Unfolded peptides and proteins studied with infrared absorption and vibrational circular dichroism spectra

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Unfolded proteins studied by Raman optical activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Polyproline II structure in proteins: identification by chiroptical spectroscopies, stability, and functions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Polyproline II structure in a sequence of seven alanine residues.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Polyproline II helical structure in protein unfolded states: lysine peptides revisited

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Host-guest study of left-handed polyproline II helix formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Synthesis and folding of native collagen III model peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Domain interactions in protein tyrosine kinase Csk.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Can a polyproline II helical motif be used in the context of sequence-selective major groove recognition of B-DNA? A molecular modelling investigation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

MOLMOL: a program for display and analysis of macromolecular structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Conservation of polyproline II helices in homologous proteins: implications for structure prediction by model building

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Titins: giant proteins in charge of muscle ultrastructure and elasticity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Reassessment of the electronic circular dichroism criteria for random coil conformations of poly(L-lysine) and the implications for protein folding and denaturation studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Are time-averaged restraints necessary for nuclear magnetic resonance refinement? A model study for DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Fast and accurate computation of the 13C chemical shifts for an alanine-rich peptide

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Structural characterization of unfolded states of apomyoglobin using residual dipolar couplings

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Short sequences of non-proline residues can adopt the polyproline II helical conformation

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Vibrational Raman optical activity characterization of poly(l-proline) II helix in alanine oligopeptides

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

An autosampling differential scanning calorimeter instrument for studying molecular interactions

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Conformation of a group 2 late embryogenesis abundant protein from soybean. Evidence of poly (L-proline)-type II structure

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Dihedral angles of trialanine in D2O determined by combining FTIR and polarized visible Raman spectroscopy

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Maximum entropy approach to the determination of solution conformation of flexible polypeptides by global conformational analysis and NMR spectroscopy--application to DNS1-c-[D-A2,bu2,Trp4,Leu5]enkephalin and DNS1-c-[D-A2bu2,Trp4,D-Leu5]enkephalin.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

Left-handed polyproline II helices commonly occur in globular proteins.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1831701

The relative order of helical propensity of amino acids changes with solvent environment

25 November 2018

1 reference

12 December 2020

Trifluoroethanol may form a solvent matrix for assisted hydrophobic interactions between peptide side chains

1 reference

12 December 2020

Polyproline II helix is a key structural motif of the elastic PEVK segment of titin

1 reference

12 December 2020

Influence of solvent and configuration of residues at positions 2 and 3 on distance and mobility of pharmacophore groups at positions 1 and 4 in cyclic enkephalin analogues.

1 reference

12 December 2020

NMR identification of left-handed polyproline type II helices

1 reference

12 December 2020

A Conformational Flexibility Scale for Amino Acids in Peptides

1 reference

12 December 2020

Proteins in 6-M guanidine hydrochloride. Demonstration of random coil behavior

1 reference

12 December 2020

New chain conformations of poly(glutamic acid) and polylysine

1 reference

12 December 2020

Circular dichroism of poly-L-proline in an unordered conformation

1 reference

12 December 2020

Computed circular dichroism spectra for the evaluation of protein conformation

1 reference

12 December 2020

Polypeptide secondary structure determination by nuclear magnetic resonance observation of short proton-proton distances

1 reference

12 December 2020

Electrostatic interactions in collagen-like triple-helical peptides

1 reference

12 December 2020

Hydrophobic solvation in aqueous trifluoroethanol solution

1 reference

12 December 2020

Effects of H2O and D2O on polyproline II helical structure

1 reference

12 December 2020

Two-dimensional infrared spectroscopy of the alanine dipeptide in aqueous solution

1 reference

12 December 2020

10.1529/BIOPHYSJ.106.097550

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17277185%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

PubMed publication ID

17277185

1 reference