(Q31112743)

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A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation

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Europe PubMed Central

PMC publication ID

18 August 2017

A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation (English)

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Europe PubMed Central

PMC publication ID

18 August 2017

ribonucleoprotein complex

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based on heuristic

inferred from title

Mihaela Zavolan

8

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Europe PubMed Central

PubMed publication ID

28 June 2017

object named as

Souvik Ghosh

5

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author name string

Andreas J Gruber

1

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Europe PubMed Central

PMC publication ID

18 August 2017

Ralf Schmidt

2

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Europe PubMed Central

PMC publication ID

18 August 2017

Andreas R Gruber

3

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Georges Martin

4

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PMC publication ID

18 August 2017

Manuel Belmadani

6

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18 August 2017

Walter Keller

7

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18 August 2017

publication date

5 July 2016

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18 August 2017

Genome Research

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Europe PubMed Central

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18 August 2017

26

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Europe PubMed Central

PMC publication ID

18 August 2017

8

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Europe PubMed Central

PMC publication ID

18 August 2017

1145-1159

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Europe PubMed Central

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18 August 2017

describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4971764/fullTextXML

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Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends.

1 reference

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21 June 2018

Systematic profiling of poly(A)+ transcripts modulated by core 3' end processing and splicing factors reveals regulatory rules of alternative cleavage and polyadenylation

1 reference

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21 June 2018

Alternative 3' UTRs act as scaffolds to regulate membrane protein localization

1 reference

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21 June 2018

N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions

1 reference

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21 June 2018

Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells

1 reference

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21 June 2018

Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types.

1 reference

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21 June 2018

APASdb: a database describing alternative poly(A) sites and selection of heterogeneous cleavage sites downstream of poly(A) signals.

1 reference

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21 June 2018

RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3' UTRs

1 reference

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21 June 2018

Regulation of lncRNA expression.

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21 June 2018

Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33.

1 reference

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21 June 2018

CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3' processing

1 reference

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21 June 2018

Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif

1 reference

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21 June 2018

RNA sequencing: from tag-based profiling to resolving complete transcript structure

1 reference

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21 June 2018

CFIm25 links alternative polyadenylation to glioblastoma tumour suppression.

1 reference

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21 June 2018

The polyadenylation code: a unified model for the regulation of mRNA alternative polyadenylation

1 reference

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21 June 2018

A promoter-level mammalian expression atlas

1 reference

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21 June 2018

Global analyses of the effect of different cellular contexts on microRNA targeting

1 reference

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21 June 2018

Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal

1 reference

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21 June 2018

Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions.

1 reference

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21 June 2018

Poly(A)-tail profiling reveals an embryonic switch in translational control

1 reference

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21 June 2018

Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression

1 reference

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21 June 2018

3' UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts

1 reference

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21 June 2018

A compendium of RNA-binding motifs for decoding gene regulation.

1 reference

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21 June 2018

Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs

1 reference

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21 June 2018

Promoter directionality is controlled by U1 snRNP and polyadenylation signals

1 reference

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21 June 2018

αCP Poly(C) binding proteins act as global regulators of alternative polyadenylation

1 reference

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21 June 2018

Widespread and extensive lengthening of 3' UTRs in the mammalian brain

1 reference

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21 June 2018

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements

1 reference

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21 June 2018

Analysis of alternative cleavage and polyadenylation by 3' region extraction and deep sequencing.

1 reference

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21 June 2018

1 reference

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21 June 2018

The UCSC Genome Browser database: extensions and updates 2013.

1 reference

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21 June 2018

STAR: ultrafast universal RNA-seq aligner

1 reference

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21 June 2018

Alternative polyadenylation: new insights from global analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4971764

21 June 2018

Argonaute CLIP--a method to identify in vivo targets of miRNAs

1 reference

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21 June 2018

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1 reference

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21 June 2018

Dynamic landscape of tandem 3' UTRs during zebrafish development

1 reference

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21 June 2018

U1 snRNP determines mRNA length and regulates isoform expression

1 reference

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21 June 2018

An in-depth map of polyadenylation sites in cancer

1 reference

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21 June 2018

Extensive alternative polyadenylation during zebrafish development

1 reference

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21 June 2018

The poly(A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4971764

21 June 2018

A quantitative atlas of polyadenylation in five mammals

1 reference

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21 June 2018

Signals for pre-mRNA cleavage and polyadenylation

1 reference

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21 June 2018

Ending the message: poly(A) signals then and now

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4971764

21 June 2018

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4971764

21 June 2018

Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4971764

21 June 2018

CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins

1 reference

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21 June 2018

Analysis and design of RNA sequencing experiments for identifying isoform regulation

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21 June 2018

U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

1 reference

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21 June 2018

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

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21 June 2018

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21 June 2018

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21 June 2018

Reprogramming of 3' untranslated regions of mRNAs by alternative polyadenylation in generation of pluripotent stem cells from different cell types

1 reference

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21 June 2018

Direct RNA sequencing

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21 June 2018

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

1 reference

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21 June 2018

Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4971764

21 June 2018

A physical and functional link between splicing factors promotes pre-mRNA 3' end processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4971764

21 June 2018

Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.

1 reference

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21 June 2018

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites

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21 June 2018

Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference

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Rac1-induced cell migration requires membrane recruitment of the nuclear oncogene SET

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21 June 2018

The UCSC Genome Browser Database: update 2006

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21 June 2018

The hnRNPs F and H2 bind to similar sequences to influence gene expression

1 reference

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21 June 2018

Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition

1 reference

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21 June 2018

A 57-nucleotide upstream early polyadenylation element in human papillomavirus type 16 interacts with hFip1, CstF-64, hnRNP C1/C2, and polypyrimidine tract binding protein

1 reference

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21 June 2018

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21 June 2018

A large-scale analysis of mRNA polyadenylation of human and mouse genes

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21 June 2018

PolyA_DB: a database for mammalian mRNA polyadenylation

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21 June 2018

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21 June 2018

Polypyrimidine tract binding protein modulates efficiency of polyadenylation.

1 reference

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21 June 2018

Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase

1 reference

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21 June 2018

Reexamining the polyadenylation signal: were we wrong about AAUAAA?

1 reference

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21 June 2018

Downstream sequence elements with different affinities for the hnRNP H/H' protein influence the processing efficiency of mammalian polyadenylation signals

1 reference

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21 June 2018

HuR and mRNA stability

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21 June 2018

Functional annotation of a full-length mouse cDNA collection

1 reference

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21 June 2018

Patterns of variant polyadenylation signal usage in human genes

1 reference

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21 June 2018

In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species

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21 June 2018

Isolation of the heterogeneous nuclear RNA-ribonucleoprotein complex (hnRNP): a unique supramolecular assembly

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21 June 2018

The C proteins of heterogeneous nuclear ribonucleoprotein complexes interact with RNA sequences downstream of polyadenylation cleavage sites

1 reference

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21 June 2018

Point mutations in AAUAAA and the poly (A) addition site: effects on the accuracy and efficiency of cleavage and polyadenylation in vitro

1 reference

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21 June 2018

3' non-coding region sequences in eukaryotic messenger RNA

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21 June 2018

Cleavage factor Im is a key regulator of 3' UTR length

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25 November 2018

Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.

1 reference

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25 November 2018

hnRNP C tetramer measures RNA length to classify RNA polymerase II transcripts for export.

1 reference

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25 November 2018

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

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25 November 2018

PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes

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25 November 2018

The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins.

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25 November 2018

Identification and characterization of the packaging proteins of core 40S hnRNP particles

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution structure of the symmetric coiled coil tetramer formed by the oligomerization domain of hnRNP C: implications for biological function

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.202432.115

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

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