(Q31129298)

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Investigating MS2/MS3 matching statistics: a model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence

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scholarly article

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Europe PubMed Central

29 June 2017

Investigating MS2/MS3 matching statistics: a model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence (English)

1 reference

Europe PubMed Central

29 June 2017

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Alexey I. Nesvizhskii

object named as

Alexey I Nesvizhskii

5

0 references

object named as

Philip C Andrews

3

0 references

Ruedi Aebersold

4

object named as

Ruedi Aebersold

1 reference

Europe PubMed Central

29 June 2017

Bernd Bodenmiller

2

object named as

Bernd Bodenmiller

1 reference

Europe PubMed Central

29 June 2017

1

object named as

Peter J Ulintz

1 reference

Europe PubMed Central

29 June 2017

publication date

13 September 2007

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Europe PubMed Central

29 June 2017

Molecular & Cellular Proteomics

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Europe PubMed Central

29 June 2017

7

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Europe PubMed Central

29 June 2017

71-87

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Europe PubMed Central

29 June 2017

1

1 reference

Europe PubMed Central

29 June 2017

Mass spectrometry-based proteomics

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Mass spectrometry in proteomics

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Interpretation of shotgun proteomic data: the protein inference problem

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

The ABC's (and XYZ's) of peptide sequencing

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Efficiency of database search for identification of mutated and modified proteins via mass spectrometry

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Large-scale characterization of HeLa cell nuclear phosphoproteins

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

New and automated MSn approaches for top-down identification of modified proteins

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

De novo peptide sequencing by two-dimensional fragment correlation mass spectrometry

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Determination of glycopeptide structures by multistage mass spectrometry with low-energy collision-induced dissociation: comparison of electrospray ionization quadrupole ion trap and matrix-assisted laser desorption/ionization quadrupole ion trap re

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

PepNovo: de novo peptide sequencing via probabilistic network modeling

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Mass spectrometry and protein analysis

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

An isotope coding strategy for proteomics involving both amine and carboxyl group labeling

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

TANDEM: matching proteins with tandem mass spectra

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Open mass spectrometry search algorithm

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

A statistical model for identifying proteins by tandem mass spectrometry

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

A highly sensitive selection method for directed evolution of homing endonucleases

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Neutral loss of amino acid residues from protonated peptides in collision-induced dissociation generates N- or C-terminal sequence ladders

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Investigation of neutral loss during collision-induced dissociation of peptide ions

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Probability-based validation of protein identifications using a modified SEQUEST algorithm

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Large-scale phosphorylation analysis of mouse liver

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Reproducible isolation of distinct, overlapping segments of the phosphoproteome

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M700128-MCP200

21 January 2018

Identifiers

10.1074/MCP.M700128-MCP200

1 reference

Europe PubMed Central

29 June 2017

1 reference

Europe PubMed Central

29 June 2017

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