(Q31148236)

17 October 2017

Shape based indexing for faster search of RNA family databases (English)

1 reference

17 October 2017

Stefan Janssen

1

0 references

Robert Giegerich

series ordinal

3

object named as

Robert Giegerich

1 reference

17 October 2017

Jens Reeder

2

1 reference

17 October 2017

29 February 2008

1 reference

17 October 2017

1 reference

17 October 2017

9

1 reference

17 October 2017

131

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-131

17 October 2017

0 references

cites work

pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Query-dependent banding (QDB) for faster RNA similarity searches

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Structural analysis of aligned RNAs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Identification and classification of conserved RNA secondary structures in the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Complete probabilistic analysis of RNA shapes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Sequence-based heuristics for faster annotation of non-coding RNA families.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Rfam: annotating non-coding RNAs in complete genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

14 July 2018

Abstract shapes of RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Rfam: an RNA family database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Secondary structure prediction for aligned RNA sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

RNA sequence analysis using covariance models

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Prediction of structured non-coding RNAs in the genomes of the nematodesCaenorhabditis elegans andCaenorhabditis briggsae

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277397

31 October 2018

Identifiers

DOI

10.1186/1471-2105-9-131

1 reference

journals/bmcbi/JanssenRG08

17 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

2277397

17 October 2017

PubMed publication ID

18312625

1 reference

PMC publication ID

2277397