(Q33235952)

24 July 2017

title

Selection of antisense oligonucleotides based on multiple predicted target mRNA structures (English)

1 reference

24 July 2017

Wenjie Shu

4

0 references

Xiaochen Bo

object named as

Xiaochen Bo

1

1 reference

ORCID Public Data File 2021

author name string

Shaoke Lou

2

1 reference

24 July 2017

Daochun Sun

3

1 reference

24 July 2017

Jing Yang

5

1 reference

24 July 2017

Shengqi Wang

6

1 reference

24 July 2017

publication date

9 March 2006

1 reference

24 July 2017

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24 July 2017

volume

7

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24 July 2017

page(s)

122

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-7-122

24 July 2017

exact match

0 references

cites work

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Thermodynamic criteria for high hit rate antisense oligonucleotide design

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mRNA accessible site tagging (MAST): a novel high throughput method for selecting effective antisense oligonucleotides

14 July 2018

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Thermodynamic and kinetic characterization of antisense oligodeoxynucleotide binding to a structured mRNA

14 July 2018

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14 July 2018

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Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond

14 July 2018

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RNA secondary structure: physical and computational aspects

14 July 2018

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Selecting optimal antisense reagents

14 July 2018

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RNA accessibility prediction: a theoretical approach is consistent with experimental studies in cell extracts

14 July 2018

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Effects of RNA secondary structure on cellular antisense activity

14 July 2018

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Predicting oligonucleotide affinity to nucleic acid targets

14 July 2018

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Antisense oligonucleotides: a systematic high-throughput approach to target validation and gene function determination

14 July 2018

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A theoretical approach to select effective antisense oligodeoxyribonucleotides at high statistical probability

14 July 2018

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Complete suboptimal folding of RNA and the stability of secondary structures.

14 July 2018

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An overview of progress in antisense therapeutics

14 July 2018

1 reference

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A rapid in vitro method for obtaining RNA accessibility patterns for complementary DNA probes: correlation with an intracellular pattern and known RNA structures

14 July 2018

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Selecting effective antisense reagents on combinatorial oligonucleotide arrays

14 July 2018

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Specific inhibition of expression of a human collagen gene (COL1A1) with modified antisense oligonucleotides. The most effective target sites are clustered in double-stranded regions of the predicted secondary structure for the mRNA.

14 July 2018

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The meaning and use of the area under a receiver operating characteristic (ROC) curve

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Computation of statistical secondary structure of nucleic acids

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Efficient algorithms for folding and comparing nucleic acid sequences

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

14 July 2018

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On finding all suboptimal foldings of an RNA molecule

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Implication of RNA structure on antisense oligonucleotide hybridization kinetics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Training feedforward networks with the Marquardt algorithm.

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Predicting the efficacy of short oligonucleotides in antisense and RNAi experiments with boosted genetic programming.

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Computational antisense oligo prediction with a neural network model.

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Prediction of RNA base pairing probabilities on massively parallel computers.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

A bayesian statistical algorithm for RNA secondary structure prediction

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Computer-aided search for effective antisense RNA target sequences of the human immunodeficiency virus type 1.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Using RNAFOLD to predict the activity of small catalytic RNAs.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1421440

Concepts to automate the theoretical design of effective antisense oligonucleotides

31 October 2018

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12 December 2020

Prediction of antisense oligonucleotide efficacy by in vitro methods

1 reference

12 December 2020

Mapping of RNA accessible sites for antisense experiments with oligonucleotide libraries

1 reference

12 December 2020

ODNBase--a web database for antisense oligonucleotide effectiveness studies. Oligodeoxynucleotides

1 reference

12 December 2020

Overcoming multidrug resistance in human tumor cells using free and liposomally encapsulated antisense oligodeoxynucleotides

1 reference

12 December 2020

Targeting of antisense DNA: comparison of activity of anti-rabbit beta-globin oligodeoxyribonucleoside phosphorothioates with computer predictions of mRNA folding

1 reference

12 December 2020

Computational approaches to the identification of ribozyme target sites

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-7-122

1 reference

24 July 2017

DBLP publication ID

journals/bmcbi/BoLSSYW06

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference