(Q33268932)

24 July 2017

title

Combining comparative genomics with de novo motif discovery to identify human transcription factor DNA-binding motifs (English)

1 reference

24 July 2017

1 reference

Linyong Mao

1

1 reference

24 July 2017

W Jim Zheng

series ordinal

2

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24 July 2017

publication date

12 December 2006

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24 July 2017

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24 July 2017

volume

7 Suppl 4

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24 July 2017

page(s)

S21

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Creative Commons Attribution 2.0 Generic

24 July 2017

copyright license

start time

1 December 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Limitations and potentials of current motif discovery algorithms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Sampling motifs on phylogenetic trees

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

A model of the statistical power of comparative genome sequence analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Assessing computational tools for the discovery of transcription factor binding sites

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Transcriptional regulatory code of a eukaryotic genome

14 July 2018

1 reference

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Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Aligning multiple genomic sequences with the threaded blockset aligner

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Eukaryotic regulatory element conservation analysis and identification using comparative genomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Motif discovery in heterogeneous sequence data.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Combining phylogenetic data with co-regulated genes to identify regulatory motifs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Sequencing and comparison of yeast species to identify genes and regulatory elements

14 July 2018

1 reference

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Toucan: deciphering the cis-regulatory logic of coregulated genes.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

Human-mouse genome comparisons to locate regulatory sites

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1780116

An algorithm for finding signals of unknown length in DNA sequences

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17217514

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-S4-S21

1 reference

24 July 2017

DBLP publication ID

journals/bmcbi/MaoZ06

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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1 reference

24 July 2017

1 reference