(Q33300676)

25 July 2017

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title

Mass spectrometry-based functional proteomics: from molecular machines to protein networks (English)

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25 July 2017

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2

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25 July 2017

Thomas Köcher

1

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25 July 2017

publication date

1 October 2007

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25 July 2017

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25 July 2017

volume

4

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25 July 2017

issue

10

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25 July 2017

page(s)

807-815

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https://scigraph.springernature.com/pub.10.1038/nmeth1093

25 July 2017

exact match

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cites work

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Correlation between protein and mRNA abundance in yeast

21 January 2018

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Overview of tag protein fusions: from molecular and biochemical fundamentals to commercial systems

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The ABC's (and XYZ's) of peptide sequencing

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7 January 2021

Proteome analysis by mass spectrometry

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7 January 2021

A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway

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7 January 2021

A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling

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7 January 2021

Wilms tumor suppressor WTX negatively regulates WNT/beta-catenin signaling

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7 January 2021

Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalized medicine

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7 January 2021

The human plasma proteome: history, character, and diagnostic prospects

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7 January 2021

Functional organization of the yeast proteome by systematic analysis of protein complexes

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7 January 2021

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

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7 January 2021

Protein phosphatase 2A protects centromeric sister chromatid cohesion during meiosis I.

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7 January 2021

Physical and functional interactions of the Arf tumor suppressor protein with nucleophosmin/B23

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7 January 2021

The archaeal exosome core is a hexameric ring structure with three catalytic subunits

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7 January 2021

Structure of a Fbw7-Skp1-cyclin E complex: multisite-phosphorylated substrate recognition by SCF ubiquitin ligases

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7 January 2021

A visual approach to proteomics.

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7 January 2021

Molecular machines for protein degradation

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7 January 2021

Current two-dimensional electrophoresis technology for proteomics

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7 January 2021

Profiling changes in gene expression during differentiation and maturation of monocyte-derived dendritic cells using both oligonucleotide microarrays and proteomics

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7 January 2021

Mass spectrometry-based proteomics turns quantitative

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7 January 2021

Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes

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7 January 2021

Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry.

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7 January 2021

Proteomic analysis of post-translational modifications

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7 January 2021

Global analysis of protein expression in yeast

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7 January 2021

The cell as a collection of protein machines: preparing the next generation of molecular biologists

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7 January 2021

Charting protein complexes, signaling pathways, and networks in the immune system

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7 January 2021

Protein chip technology

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7 January 2021

The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest

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7 January 2021

The fluorescent toolbox for assessing protein location and function

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7 January 2021

High-throughput mapping of a dynamic signaling network in mammalian cells

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7 January 2021

Structural systems biology: modelling protein interactions.

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7 January 2021

Detecting protein function and protein-protein interactions from genome sequences

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7 January 2021

Functional modules by relating protein interaction networks and gene expression.

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7 January 2021

Modeling cellular machinery through biological network comparison

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7 January 2021

The study of macromolecular complexes by quantitative proteomics

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7 January 2021

Functional and quantitative proteomics using SILAC

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7 January 2021

Protein stoichiometry of a multiprotein complex, the human spliceosomal U1 small nuclear ribonucleoprotein: absolute quantification using isotope-coded tags and mass spectrometry

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7 January 2021

A novel genetic system to detect protein-protein interactions

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7 January 2021

Mass spectrometry-based proteomics

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7 January 2021

A new grammar for drug discovery

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7 January 2021

Phage-display technology--finding a needle in a vast molecular haystack

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7 January 2021

Protein and antibody arrays and their medical applications.

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7 January 2021

Global analysis of protein activities using proteome chips

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7 January 2021

Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front

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7 January 2021

Simultaneous detection of multiple cytokines from conditioned media and patient's sera by an antibody-based protein array system

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7 January 2021

Analysis of yeast protein kinases using protein chips.

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7 January 2021

Optimized normalization for antibody microarrays and application to serum-protein profiling

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7 January 2021

Purification and characterization of proteasomes from Trypanosoma brucei

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7 January 2021

Functional assignment of the 20 S proteasome from Trypanosoma brucei using mass spectrometry and new bioinformatics approaches.

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7 January 2021

Antibody-based proteomics for human tissue profiling

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7 January 2021

Binding proteins selected from combinatorial libraries of an alpha-helical bacterial receptor domain

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7 January 2021

Adaptive recognition by nucleic acid aptamers

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7 January 2021

Making the most of affinity tags

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7 January 2021

Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice

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7 January 2021

Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry

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7 January 2021

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

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7 January 2021

A generic protein purification method for protein complex characterization and proteome exploration

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7 January 2021

An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells

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7 January 2021

An efficient protein complex purification method for functional proteomics in higher eukaryotes

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7 January 2021

A modified tandem affinity purification tag technique for the purification of protein complexes in mammalian cells.

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7 January 2021

Identification of novel protein-protein interactions using a versatile mammalian tandem affinity purification expression system

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7 January 2021

The DEXD/H-box RNA helicase RHII/Gu is a co-factor for c-Jun-activated transcription

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7 January 2021

Protein complexes and proteome organization from yeast to man.

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7 January 2021

Tandem Mass Spectrometry Reveals the Quaternary Organization of Macromolecular Assemblies

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7 January 2021

Mass spectrometry of ribosomes and ribosomal subunits

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7 January 2021

Structural organization of the 19S proteasome lid: insights from MS of intact complexes.

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7 January 2021

Subunit architecture of multimeric complexes isolated directly from cells

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7 January 2021

A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry.

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7 January 2021

Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry

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7 January 2021

In-gel digestion for mass spectrometric characterization of proteins and proteomes

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7 January 2021

Absolute quantification of proteins in solutions and in polyacrylamide gels by mass spectrometry

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7 January 2021

Direct analysis of protein complexes using mass spectrometry

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7 January 2021

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

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7 January 2021

Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry

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7 January 2021

Analytical properties of the nanoelectrospray ion source

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7 January 2021

Electrospray ionization for mass spectrometry of large biomolecules

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7 January 2021

Matrix-assisted ultraviolet laser desorption of non-volatile compounds

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7 January 2021

Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

1 reference

7 January 2021

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

7 January 2021

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

7 January 2021

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

1 reference

7 January 2021

Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

1 reference

7 January 2021

Interpretation of shotgun proteomic data: the protein inference problem

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7 January 2021

Standards for systems biology

1 reference

7 January 2021

The minimum information about a proteomics experiment (MIAPE)

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7 January 2021

The minimum information required for reporting a molecular interaction experiment (MIMIx).

1 reference

7 January 2021

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

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7 January 2021

Structure-based assembly of protein complexes in yeast

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7 January 2021

Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry

1 reference

7 January 2021

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

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7 January 2021

Proteome survey reveals modularity of the yeast cell machinery

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7 January 2021

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

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7 January 2021

A comprehensive two-hybrid analysis to explore the yeast protein interactome

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7 January 2021

Organellar proteomics: turning inventories into insights

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7 January 2021

The human disease network

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7 January 2021

Identifiers

DOI

10.1038/NMETH1093

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Dimensions Publication ID

25 July 2017

1028563112

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