(Q33315558)

25 July 2017

title

Superhelical destabilization in regulatory regions of stress response genes (English)

1 reference

25 July 2017

Huiquan Wang

1

1 reference

25 July 2017

Craig J Benham

series ordinal

2

1 reference

25 July 2017

publication date

1 January 2008

1 reference

PLOS Computational Biology

25 July 2017

published in

1 reference

25 July 2017

volume

4

1 reference

25 July 2017

issue

1

1 reference

25 July 2017

page(s)

e17

1 reference

Creative Commons Attribution 4.0 International

25 July 2017

copyright license

start time

18 January 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci

14 July 2018

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14 July 2018

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14 July 2018

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A DNA unwinding element and an ARS consensus comprise a replication origin within a yeast chromosome.

14 July 2018

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14 July 2018

1 reference

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14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Supercoiling of the DNA template during transcription

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Molecular characterization of the proU loci of Salmonella typhimurium and Escherichia coli encoding osmoregulated glycine betaine transport systems

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

DNA supercoiling and prokaryotic transcription

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Characterization of the integration host factor binding site in the ilvPG1 promoter region of the ilvGMEDA operon of Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Control of bacterial DNA supercoiling

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Influence of osmolarity of the growth medium on the outer membrane protein pattern of Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Torsional stress and local denaturation in supercoiled DNA

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

The analysis of stress-induced duplex destabilization in long genomic DNA sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Role for a region of helically unstable DNA within the Epstein-Barr virus latent cycle origin of DNA replication oriP in origin function

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Mode of action of the TyrR protein: repression and activation of the tyrP promoter of Escherichia coli

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Effect of varying the supercoiling of DNA on transcription and its regulation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211533

Duplex destabilization in superhelical DNA is predicted to occur at specific transcriptional regulatory regions

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18208321

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Energetics of the strand separation transition in superhelical DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18208321

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of the structure of a natural alternating d(TA)n sequence in yeast chromatin

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18208321

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0040017

1 reference

25 July 2017

DBLP publication ID

journals/ploscb/WangB08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

25 July 2017

1 reference