(Q33316875)

25 July 2017

Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation (English)

1 reference

25 July 2017

0 references

David D Smith

1

0 references

Pål Sætrom

1 reference

ORCID Public Data File 2021

author name string

Pål Saetrom

2

1 reference

25 July 2017

Ola Snøve

3

1 reference

25 July 2017

Cathryn Lundberg

4

1 reference

25 July 2017

Guillermo E Rivas

5

1 reference

25 July 2017

Carlotta Glackin

6

1 reference

25 July 2017

Garrett P Larson

7

1 reference

25 July 2017

28 January 2008

1 reference

25 July 2017

1 reference

25 July 2017

9

1 reference

25 July 2017

63

1 reference

Creative Commons Attribution 2.0 Generic

25 July 2017

start time

28 January 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-63

0 references

cites work

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Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves

21 June 2018

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Identification and meta-analysis of a small gene expression signature for the diagnosis of estrogen receptor status in invasive ductal breast cancer

21 June 2018

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Genome-wide analysis of estrogen receptor binding sites

21 June 2018

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Concordance among gene-expression-based predictors for breast cancer

21 June 2018

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Gene expression and benefit of chemotherapy in women with node-negative, estrogen receptor-positive breast cancer

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

21 June 2018

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

21 June 2018

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The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

21 June 2018

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MicroRNA gene expression deregulation in human breast cancer

21 June 2018

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GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data

21 June 2018

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oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes

21 June 2018

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Mining for regulatory programs in the cancer transcriptome

21 June 2018

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Comparative genomic analysis reveals a distant liver enhancer upstream of the COUP-TFII gene

21 June 2018

1 reference

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Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

21 June 2018

1 reference

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Principles of microRNA-target recognition

21 June 2018

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Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer

21 June 2018

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Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival

21 June 2018

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DeltaEF1 is a transcriptional repressor of E-cadherin and regulates epithelial plasticity in breast cancer cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

E2Fs link the control of G1/S and G2/M transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression

21 June 2018

1 reference

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Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival

21 June 2018

1 reference

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Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes

21 June 2018

1 reference

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ONCOMINE: a cancer microarray database and integrated data-mining platform

21 June 2018

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Different gene expression patterns in invasive lobular and ductal carcinomas of the breast

21 June 2018

1 reference

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Lymphoid enhancer factor/T cell factor expression in colorectal cancer

21 June 2018

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Transcriptional activation by the zinc-finger homeodomain protein delta EF1 in estrogen signaling cascades

21 June 2018

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Prediction of mammalian microRNA targets

21 June 2018

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Beta-catenin and Tcfs in mammary development and cancer

21 June 2018

1 reference

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A gene-coexpression network for global discovery of conserved genetic modules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Breast cancer classification and prognosis based on gene expression profiles from a population-based study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

GEPAS: A web-based resource for microarray gene expression data analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

DAVID: Database for Annotation, Visualization, and Integrated Discovery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Gene expression profiles of human breast cancer progression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

A gene-expression signature as a predictor of survival in breast cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Conducting systematic reviews of diagnostic studies: didactic guidelines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Gene expression profiling predicts clinical outcome of breast cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Approaches to heterogeneity in meta-analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Predicting the clinical status of human breast cancer by using gene expression profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Methods for exploring heterogeneity in meta-analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

beta-catenin signaling and cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Distinctive gene expression patterns in human mammary epithelial cells and breast cancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

A tutorial on conducting meta-analyses of clinical outcome research

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Variation in baseline risk as an explanation of heterogeneity in meta-analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

A survey of 178 NF-Y binding CCAAT boxes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Meta-Analysis. Potentials and promise

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Prognostic value of steroid receptors after long-term follow-up of 2257 operable breast cancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Rapid cDNA sequencing (expressed sequence tags) from a directionally cloned human infant brain cDNA library

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Construction and characterization of a normalized cDNA library

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Why sources of heterogeneity in meta-analysis should be investigated

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Association of increased basement membrane invasiveness with absence of estrogen receptor and expression of vimentin in human breast cancer cell lines

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Identification of GATA3 as a breast cancer prognostic marker by global gene expression meta-analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Explaining heterogeneity in meta-analysis: a comparison of methods.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2275244

Sorting out breast-cancer gene signatures

31 October 2018

1 reference

PubMed

12 December 2020

Gene expression profile assays as predictors of recurrence-free survival in early-stage breast cancer: a metaanalysis

1 reference

PubMed

12 December 2020

Mutational analysis of Wnt pathway gene LEF1 in common human carcinomas

1 reference

PubMed

12 December 2020

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12 December 2020

Identifiers

DOI

10.1186/1471-2105-9-63

1 reference

journals/bmcbi/SmithSSLRGL08

25 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference