(Q33352085)

26 July 2017

Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions (English)

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26 July 2017

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Hinako Takehisa

1

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26 July 2017

Yutaka Sato

2

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26 July 2017

Motoko Igarashi

3

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26 July 2017

Tomomi Abiko

4

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26 July 2017

Baltazar A Antonio

5

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26 July 2017

Kaori Kamatsuki

6

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26 July 2017

Hiroshi Minami

7

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26 July 2017

Nobukazu Namiki

8

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26 July 2017

Yoshiaki Inukai

9

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26 July 2017

Mikio Nakazono

10

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26 July 2017

Yoshiaki Nagamura

11

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26 July 2017

25 October 2011

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26 July 2017

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26 July 2017

69

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26 July 2017

1

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26 July 2017

126-140

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Genome-wide insertional mutagenesis of Arabidopsis thaliana

26 July 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Cytokinin oxidase regulates rice grain production

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Brassinosteroids interact with auxin to promote lateral root development in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Hormone interactions at the root apical meristem.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A gene expression map of the Arabidopsis root

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A high-resolution root spatiotemporal map reveals dominant expression patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A stele-enriched gene regulatory network in the Arabidopsis root

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Plant sulphate transporters: co-ordination of uptake, intracellular and long-distance transport.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Development of Casparian strip in rice cultivars

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Arabidopsis ethylene-response gene ETR1: similarity of product to two-component regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Auxin stimulates DWARF4 expression and brassinosteroid biosynthesis in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Cytokinins determine Arabidopsis root-meristem size by controlling cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Emerging role of cytokinin as a regulator of cellular differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Transcriptomic and proteomic analyses of pericycle cells of the maize primary root

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Formation and separation of root border cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

agriGO: a GO analysis toolkit for the agricultural community

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Rice expression atlas in reproductive development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Hormone interactions during lateral root formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Genome-wide analysis of spatial and temporal gene expression in rice panicle development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Food: An underground revolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

The Cell Wall Navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Relationships between structural development and the absorption of ions by the root system of Cucurbita pepo

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K(+)/Na(+) ratio in leaves during salinity stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Function of root border cells in plant health: pioneers in the rhizosphere.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

The roots of a new green revolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

The auxin-regulated AP2/EREBP gene PUCHI is required for morphogenesis in the early lateral root primordium of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Various spatiotemporal expression profiles of anther-expressed genes in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

From weeds to crops: genetic analysis of root development in cereals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Manifestation of heterosis during early maize (Zea mays L.) root development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Ethylene insensitivity conferred by Arabidopsis ERS gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

EIN4 and ERS2 are members of the putative ethylene receptor gene family in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Identification and characterization of cytokinin-signalling gene families in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Functional genomics of root growth and development in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Transcription profile analyses identify genes and pathways central to root cap functions in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Gene expression profiles during the initial phase of salt stress in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Root mucilage from pea and its utilization by rhizosphere bacteria as a sole carbon source

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Regulation of root elongation by histone acetylation in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

LBD18/ASL20 regulates lateral root formation in combination with LBD16/ASL18 downstream of ARF7 and ARF19 in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Control of tillering in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Brassinosteroids stimulate plant tropisms through modulation of polar auxin transport in Brassica and Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

ARL1, a LOB-domain protein required for adventitious root formation in rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Shoot Na+ exclusion and increased salinity tolerance engineered by cell type-specific alteration of Na+ transport in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Inhibition of brassinosteroid biosynthesis by either a dwarf4 mutation or a brassinosteroid biosynthesis inhibitor rescues defects in tropic responses of hypocotyls in the arabidopsis mutant nonphototropic hypocotyl 4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Brassinolide InducesIAA5, IAA19, and DR5, a Synthetic Auxin Response Element in Arabidopsis, Implying a Cross Talk Point of Brassinosteroid and Auxin Signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Arabidopsis Aux/IAA genes are involved in brassinosteroid-mediated growth responses in a manner dependent on organ type

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Laser-capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

PlnTFDB: updated content and new features of the plant transcription factor database

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Dichotomy in the NRT gene families of dicots and grass species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

The Rice Annotation Project Database (RAP-DB): 2008 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A gain-of-function mutation in IAA28 suppresses lateral root development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

ETR2 is an ETR1-like gene involved in ethylene signaling in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Tissue and cell-specific localization of rice aquaporins and their water transport activities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Deletion in a gene associated with grain size increased yields during rice domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

LRP1, a gene expressed in lateral and adventitious root primordia of arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Energization of transport processes in plants. roles of the plasma membrane H+-ATPase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A Link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Constitutive expression of a novel-type ammonium transporter OsAMT2 in rice plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Ethylene upregulates auxin biosynthesis in Arabidopsis seedlings to enhance inhibition of root cell elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Starch synthesis in Arabidopsis is achieved by spatial cotranscription of core starch metabolism genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Domain II mutations in CRANE/IAA18 suppress lateral root formation and affect shoot development in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Control of rice grain-filling and yield by a gene with a potential signature of domestication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

A dynamic gene expression atlas covering the entire life cycle of rice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Genetic and molecular bases of rice yield

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Spatial distribution and temporal variation of the rice silicon transporter Lsi1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

The IAA1 protein is encoded by AXR5 and is a substrate of SCF(TIR1).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

Genomics approach to abscisic acid- and gibberellin-responsive genes in rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2011.04777.X

10.1111/J.1365-313X.2011.04777.X

21 January 2018

Identifiers

DOI

1 reference

26 July 2017

1 reference