(Q33359771)

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Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes

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Europe PubMed Central

PubMed publication ID

26 July 2017

Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Listeria monocytogenes

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Martin Wiedmann

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Martin Wiedmann

3

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author name string

Renato H Orsi

1

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Qi Sun

2

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Europe PubMed Central

PubMed publication ID

26 July 2017

publication date

12 August 2008

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Europe PubMed Central

PubMed publication ID

26 July 2017

BMC Evolutionary Biology

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Europe PubMed Central

PubMed publication ID

26 July 2017

8

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

233

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Europe PubMed Central

PubMed publication ID

26 July 2017

Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2532693

14 July 2018

Comparative transcriptome analysis of Listeria monocytogenes strains of the two major lineages reveals differences in virulence, cell wall, and stress response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2532693

14 July 2018

Adaptive mutations in bacteria: high rate and small effects

1 reference

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14 July 2018

Genes under positive selection in Escherichia coli.

1 reference

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14 July 2018

Helicobacter pylori evolution and phenotypic diversification in a changing host

1 reference

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14 July 2018

Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition

1 reference

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14 July 2018

Flagellar motility is critical for Listeria monocytogenes biofilm formation

1 reference

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14 July 2018

Prediction of highly expressed genes in microbes based on chromatin accessibility

1 reference

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14 July 2018

Inference of bacterial microevolution using multilocus sequence data

1 reference

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14 July 2018

Listeria monocytogenes flagella are used for motility, not as adhesins, to increase host cell invasion

1 reference

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14 July 2018

Interference among deleterious mutations favours sex and recombination in finite populations

1 reference

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14 July 2018

Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.

1 reference

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14 July 2018

Recombination between elongation factor 1alpha genes from distantly related archaeal lineages

1 reference

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14 July 2018

A simple and robust statistical test for detecting the presence of recombination

1 reference

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14 July 2018

Molecular characterization of Listeria monocytogenes from natural and urban environments

1 reference

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14 July 2018

LEGER: knowledge database and visualization tool for comparative genomics of pathogenic and non-pathogenic Listeria species

1 reference

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14 July 2018

Select Listeria monocytogenes subtypes commonly found in foods carry distinct nonsense mutations in inlA, leading to expression of truncated and secreted internalin A, and are associated with a reduced invasion phenotype for human intestinal [...]

1 reference

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14 July 2018

Investigation of specific substitutions in virulence genes characterizing phenotypic groups of low-virulence field strains of Listeria monocytogenes

1 reference

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14 July 2018

Role of FliF and FliI of Listeria monocytogenes in flagellar assembly and pathogenicity

1 reference

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14 July 2018

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

1 reference

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14 July 2018

Evolution and molecular phylogeny of Listeria monocytogenes isolated from human and animal listeriosis cases and foods

1 reference

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14 July 2018

Evolutionary traction: the cost of adaptation and the evolution of sex.

1 reference

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14 July 2018

Evolutionary history of the genus Listeria and its virulence genes

1 reference

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14 July 2018

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

1 reference

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14 July 2018

Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection

1 reference

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14 July 2018

Listeria monocytogenes isolates from foods and humans form distinct but overlapping populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2532693

14 July 2018

The speed of adaptation in large asexual populations

1 reference

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14 July 2018

Ecology and transmission of Listeria monocytogenes infecting ruminants and in the farm environment

1 reference

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14 July 2018

Role of flagellin and the two-component CheA/CheY system of Listeria monocytogenes in host cell invasion and virulence.

1 reference

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14 July 2018

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

1 reference

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14 July 2018

Multilocus sequence typing of Listeria monocytogenes by use of hypervariable genes reveals clonal and recombination histories of three lineages

1 reference

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14 July 2018

Use of PCR-restriction fragment length polymorphism of inlA for rapid screening of Listeria monocytogenes strains deficient in the ability to invade Caco-2 cells

1 reference

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1 reference

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14 July 2018

Listeria monocytogenes and listeriosis: a review of hazard characterisation for use in microbiological risk assessment of foods

1 reference

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14 July 2018

Strong positive selection and recombination drive the antigenic variation of the PilE protein of the human pathogen Neisseria meningitidis

1 reference

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14 July 2018

New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays

1 reference

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14 July 2018

Statistical significance for genomewide studies

1 reference

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14 July 2018

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2532693

14 July 2018

Comparison of the genome sequences of Listeria monocytogenes and Listeria innocua: clues for evolution and pathogenicity

1 reference

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Comparative genomic analyses of the vibrio pathogenicity island and cholera toxin prophage regions in nonepidemic serogroup strains of Vibrio cholerae

1 reference

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Expression of truncated Internalin A is involved in impaired internalization of some Listeria monocytogenes isolates carried asymptomatically by humans

1 reference

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Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

1 reference

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14 July 2018

Assessment of the pathogenic potential of two Listeria monocytogenes human faecal carriage isolates

1 reference

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14 July 2018

An efficient algorithm for large-scale detection of protein families

1 reference

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Strong diversifying selection on domains of the Plasmodium falciparum apical membrane antigen 1 gene

1 reference

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14 July 2018

Comparative genetic characterization of Listeria monocytogenes isolates from human and animal listeriosis cases

1 reference

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14 July 2018

The interaction of protein structure, selection, and recombination on the evolution of the type-1 fimbrial major subunit (fimA) from Escherichia coli.

1 reference

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14 July 2018

Characterization and pathogenic potential of Listeria monocytogenes isolates from the smoked fish industry

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14 July 2018

A sheep in wolf's clothing: Listeria innocua strains with teichoic acid-associated surface antigens and genes characteristic of Listeria monocytogenes serogroup 4

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14 July 2018

Absence of serotype-specific surface antigen and altered teichoic acid glycosylation among epidemic-associated strains of Listeria monocytogenes

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14 July 2018

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14 July 2018

Immunity to Listeria infection

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14 July 2018

EMBOSS: the European Molecular Biology Open Software Suite

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14 July 2018

Codon-substitution models for heterogeneous selection pressure at amino acid sites

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14 July 2018

Food-related illness and death in the United States

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14 July 2018

The bvr locus of Listeria monocytogenes mediates virulence gene repression by beta-glucosides.

1 reference

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14 July 2018

Molecular evolution and mosaic structure of alpha, beta, and gamma intimins of pathogenic Escherichia coli

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14 July 2018

Cell wall teichoic acid glycosylation in Listeria monocytogenes serotype 4b requires gtcA, a novel, serogroup-specific gene.

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14 July 2018

Free recombination within Helicobacter pylori

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14 July 2018

Bacterial surface proteins recognized by CD4+ T cells during murine infection with Listeria monocytogenes.

1 reference

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14 July 2018

The inlA gene of Listeria monocytogenes LO28 harbors a nonsense mutation resulting in release of internalin.

1 reference

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14 July 2018

H2-M3 restricted presentation of a Listeria-derived leader peptide

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14 July 2018

PAML: a program package for phylogenetic analysis by maximum likelihood

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14 July 2018

Investigation of a listeriosis epizootic in sheep in New York state

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14 July 2018

Modulation of DNA topology by flaR, a new gene from Listeria monocytogenes

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14 July 2018

A Listeria monocytogenes pentapeptide is presented to cytolytic T lymphocytes by the H2-M3 MHC class Ib molecule.

1 reference

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14 July 2018

Identification of an H2-M3-restricted Listeria epitope: implications for antigen presentation by M3.

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14 July 2018

Borrelia burgdorferi is clonal: implications for taxonomy and vaccine development.

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14 July 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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14 July 2018

Identification of a CD4+ T cell-stimulating antigen of pathogenic bacteria by expression cloning

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14 July 2018

Codon usage in bacteria: correlation with gene expressivity

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14 July 2018

Listeria monocytogenes and listeric infections

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14 July 2018

Gene splicing by overlap extension: tailor-made genes using the polymerase chain reaction

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14 July 2018

The Hin invertasome: protein-mediated joining of distant recombination sites at the enhancer

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14 July 2018

H-2M3 presents a Listeria monocytogenes peptide to cytotoxic T lymphocytes

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14 July 2018

Listeria monocytogenes F2365 carries several authentic mutations potentially leading to truncated gene products, including inlB, and demonstrates atypical phenotypic characteristics

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31 October 2018

The rate of adaptive evolution in enteric bacteria

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31 October 2018

Genetic and phenotypic characterization of Listeria monocytogenes lineage III.

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31 October 2018

"LaneSpector", a tool for membrane proteome profiling based on sodium dodecyl sulfate-polyacrylamide gel electrophoresis/liquid chromatography-tandem mass spectrometry analysis: application to Listeria monocytogenes membrane proteins

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31 October 2018

Longitudinal studies on Listeria in smoked fish plants: impact of intervention strategies on contamination patterns

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31 October 2018

Codon bias signatures, organization of microorganisms in codon space, and lifestyle

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31 October 2018

The effect of deleterious alleles on adaptation in asexual populations.

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31 October 2018

High-level resistance to class IIa bacteriocins is associated with one general mechanism in Listeria monocytogenes.

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31 October 2018

A sigma(54)-dependent PTS permease of the mannose family is responsible for sensitivity of Listeria monocytogenes to mesentericin Y105.

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31 October 2018

Sexual recombination and the power of natural selection

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31 October 2018

A simulation study of the reliability of recombination detection methods.

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31 October 2018

The fate of competing beneficial mutations in an asexual population.

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31 October 2018

Recombination and positive selection contribute to evolution of Listeria monocytogenes inlA

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31 October 2018

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31 October 2018

Listeria monocytogenes internalins are highly diverse and evolved by recombination and positive selection

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31 October 2018

Phylogenetic Evidence for Frequent Positive Selection and Recombination in the Meningococcal Surface Antigen PorB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2532693

31 October 2018

The effect of linkage on limits to artificial selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Growth of Listeria monocytogenes at refrigeration temperatures

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct sequence identification and kinetic analysis of an MHC class I-restricted Listeria monocytogenes CTL epitope

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the role of betL in contributing to the growth and survival of Listeria monocytogenes LO28

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Generalized transduction of serotype 1/2 and serotype 4b strains of Listeria monocytogenes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Attributing risk to Listeria monocytogenes subgroups: dose response in relation to genetic lineages

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cutting edge: paradigm revisited: antibody provides resistance to Listeria infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of early viral and bacterial distribution and disease by natural antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diminishing Returns from Mutation Supply Rate in Asexual Populations

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physiological and biochemical aspects of the acid survival of Listeria monocytogenes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two Listeria monocytogenes CTL epitopes are processed from the same antigen with different efficiencies

1 reference

https://pubmed.ncbi.nlm.nih.gov/18700032

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2148-8-233

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Dimensions Publication ID

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-8-233

9 September 2019

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

ResearchGate publication ID

0 references

Sitelinks

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