(Q33361481)

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A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

1 reference

based on heuristic

inferred from title

linear regression

1 reference

based on heuristic

inferred from title

Shotgun proteomics

1 reference

based on heuristic

inferred from title

Michael A. Freitas

object named as

Michael A Freitas

3

0 references

author name string

Hua Xu

1

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Lanhao Yang

2

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

publication date

19 August 2008

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

347

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Monte carlo simulation-based algorithms for analysis of shotgun proteomic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Informatics for peptide retention properties in proteomic LC-MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

A platform for accurate mass and time analyses of mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Liquid chromatography mass spectrometry profiling of histones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Requirements for prediction of peptide retention time in reversed-phase high-performance liquid chromatography: hydrophilicity/hydrophobicity of side-chains at the N- and C-termini of peptides are dramatically affected by the end-groups and location

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Use of peptide retention time prediction for protein identification by off-line reversed-phase HPLC-MALDI MS/MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

The utility of accurate mass and LC elution time information in the analysis of complex proteomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Open source system for analyzing, validating, and storing protein identification data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Differential expression of histone post-translational modifications in acute myeloid and chronic lymphocytic leukemia determined by high-pressure liquid chromatography and mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Prediction of peptide retention times in high-pressure liquid chromatography on the basis of amino acid composition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

21 June 2018

Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

31 October 2018

Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

31 October 2018

Liquid chromatography at critical conditions: comprehensive approach to sequence-dependent retention time prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

31 October 2018

Prediction of peptide retention at different HPLC conditions from multiple linear regression models.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

31 October 2018

The need for a public proteomics repository

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

31 October 2018

Protein identification by liquid chromatography-mass spectrometry using retention time prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

31 October 2018

Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553802

31 October 2018

Application of Peptide LC Retention Time Information in a Discriminant Function for Peptide Identification by Tandem Mass Spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/18713471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Histone-specific acetyltransferases from calf thymus. Isolation, properties, and substrate specificity of three different enzymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18713471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of peptide chain length on peptide retention behaviour in reversed-phase chromatography

1 reference

https://pubmed.ncbi.nlm.nih.gov/18713471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/18713471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The isolation of peptides by high-performance liquid chromatography using predicted elution positions

1 reference

https://pubmed.ncbi.nlm.nih.gov/18713471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prediction of peptide retention times

1 reference

https://pubmed.ncbi.nlm.nih.gov/18713471

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-9-347

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

DBLP publication ID

journals/bmcbi/XuYF08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

ResearchGate publication ID

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