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Automated genome mining for natural products.
scientific article
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
review article
1 reference
stated in
Europe PubMed Central
title
Automated genome mining for natural products
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
main subject
automation
0 references
natural product
1 reference
based on heuristic
inferred from title
author
Peter Man-Un Ung
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
Sylvie Garneau-Tsodikova
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
author name string
Michael H T Li
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
James Zajkowski
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
David H Sherman
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
publication date
16 June 2009
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
published in
BMC Bioinformatics
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
volume
10
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
page(s)
185
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
exact match
https://scigraph.springernature.com/pub.10.1186/1471-2105-10-185
0 references
cites work
Plant-derived compounds in clinical trials
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PubMed Central
reference URL
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Plant natural products: back to the future or into extinction?
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14 July 2018
Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.
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14 July 2018
Microbial genomics for the improvement of natural product discovery
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14 July 2018
Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs)
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14 July 2018
Metabolomics, genomics, proteomics, and the identification of enzymes and their substrates and products
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14 July 2018
The role of natural product chemistry in drug discovery
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Substrate recognition by nonribosomal peptide synthetase multi-enzymes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Cloning, sequencing, and biochemical characterization of the nostocyclopeptide biosynthetic gene cluster: molecular basis for imine macrocyclization
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Drugs from the deep: marine natural products as drug candidates
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14 July 2018
Engineering a mevalonate pathway in Escherichia coli for production of terpenoids
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14 July 2018
Vancomycin assembly: nature's way.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Mevalonate and nonmevalonate pathways for the biosynthesis of isoprene units.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Lead discovery using molecular docking
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PubMed Central
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14 July 2018
Chemical warfare between microbes promotes biodiversity
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14 July 2018
Alteration of the substrate specificity of a modular polyketide synthase acyltransferase domain through site-specific mutations.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Tailoring enzymes that modify nonribosomal peptides during and after chain elongation on NRPS assembly lines
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Plants as source of drugs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
The biosynthetic gene cluster for the microtubule-stabilizing agents epothilones A and B from Sorangium cellulosum So ce90
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
The parallel and convergent universes of polyketide synthases and nonribosomal peptide synthetases
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Initiation, elongation, and termination strategies in polyketide and polypeptide antibiotic biosynthesis
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
retrieved
14 July 2018
The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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14 July 2018
ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures
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PubMed Central
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31 October 2018
Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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31 October 2018
Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
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31 October 2018
Active-site residue, domain and module swaps in modular polyketide synthases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
retrieved
31 October 2018
Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
retrieved
31 October 2018
Cloning and heterologous expression of the epothilone gene cluster.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712472
retrieved
31 October 2018
Divergent sequence motifs correlated with the substrate specificity of (methyl)malonyl-CoA:acyl carrier protein transacylase domains in modular polyketide synthases
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19531248
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/1471-2105-10-185
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
DBLP publication ID
journals/bmcbi/LiUZGS09
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1049523926
0 references
PMCID
2712472
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
PubMed ID
19531248
1 reference
stated in
Europe PubMed Central
PMCID
2712472
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19531248%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 January 2020
ResearchGate publication ID
26296445
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