(Q33495549)

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Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens

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scholarly article

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Europe PubMed Central

PubMed publication ID

27 July 2017

Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens (English)

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Europe PubMed Central

PubMed publication ID

27 July 2017

Leighton Pritchard

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Leighton Pritchard

1

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Patrice François

5

object named as

Patrice François

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Jacques Schrenzel

6

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Jacques Schrenzel

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Europe PubMed Central

PubMed publication ID

27 July 2017

author name string

Hui Liu

2

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Europe PubMed Central

PubMed publication ID

27 July 2017

Clare Booth

3

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Europe PubMed Central

PubMed publication ID

27 July 2017

Emma Douglas

4

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Peter E Hedley

7

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Paul R J Birch

8

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Europe PubMed Central

PubMed publication ID

27 July 2017

Ian K Toth

9

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Europe PubMed Central

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27 July 2017

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publication date

21 August 2009

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Europe PubMed Central

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27 July 2017

PLOS Computational Biology

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Europe PubMed Central

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27 July 2017

5

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Europe PubMed Central

PubMed publication ID

27 July 2017

8

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

e1000473

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Europe PubMed Central

PubMed publication ID

27 July 2017

copyright license

Creative Commons Attribution 4.0 International

21 August 2009

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April 2022 Public Data File from Crossref

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0 references

Soft rot erwiniae: from genes to genomes

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Differential role of ferritins in iron metabolism and virulence of the plant-pathogenic bacterium Erwinia chrysanthemi 3937.

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Comparative genomics of host-specific virulence in Pseudomonas syringae

1 reference

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1 reference

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Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands

1 reference

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Type III effector proteins: doppelgangers of bacterial virulence

1 reference

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Comparative genomics reveals what makes an enterobacterial plant pathogen

1 reference

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Use of oligoarrays for characterization of community-onset methicillin-resistant Staphylococcus aureus

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GenomeDiagram: a python package for the visualization of large-scale genomic data.

1 reference

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1 reference

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Rotting softly and stealthily.

1 reference

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The net of life: reconstructing the microbial phylogenetic network

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718846

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Characterization of the hrp pathogenicity cluster of Erwinia carotovora subsp. carotovora: high basal level expression in a mutant is associated with reduced virulence

1 reference

https://pubmed.ncbi.nlm.nih.gov/19696881

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of a pooled transposon mutation grid to demonstrate roles in disease development for Erwinia carotovora subsp. atroseptica putative type III secreted effector (DspE/A) and helper (HrpN) proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/19696881

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Distinguishing bacterial pathogens of potato using a genome-wide microarray approach

1 reference

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Identifiers

10.1371/JOURNAL.PCBI.1000473

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

DBLP publication ID

journals/ploscb/PritchardLBDFSHBT09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

ResearchGate publication ID

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