(Q33520117)

27 July 2017

title

Prediction of backbone dihedral angles and protein secondary structure using support vector machines (English)

1 reference

protein structure prediction

27 July 2017

main subject

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protein structure

0 references

support vector machine

1 reference

Petros Kountouris

1

0 references

Jonathan D. Hirst

object named as

Jonathan D Hirst

series ordinal

2

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publication date

22 December 2009

1 reference

27 July 2017

1 reference

27 July 2017

volume

10

1 reference

27 July 2017

page(s)

437

1 reference

Creative Commons Attribution 2.0 Generic

27 July 2017

copyright license

start time

1 December 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

support vector machine

1 reference

PCI-SS: MISO dynamic nonlinear protein secondary structure prediction.

inferred from title

cites work

1 reference

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21 June 2018

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21 June 2018

1 reference

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Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network.

21 June 2018

1 reference

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21 June 2018

1 reference

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Analysis and prediction of protein local structure based on structure alphabets.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Real-value prediction of backbone torsion angles.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Support vector machines for prediction of dihedral angle regions

21 June 2018

1 reference

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PREDITOR: a web server for predicting protein torsion angle restraints

21 June 2018

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Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions

21 June 2018

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Protein backbone angle prediction with machine learning approaches.

21 June 2018

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Structure validation by Calpha geometry: phi,psi and Cbeta deviation

21 June 2018

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Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.

21 June 2018

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Getting the most from PSI-BLAST.

21 June 2018

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21 June 2018

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Review: protein secondary structure prediction continues to rise.

21 June 2018

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Validating clustering for gene expression data.

21 June 2018

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Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks

21 June 2018

1 reference

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HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.

21 June 2018

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Cascaded multiple classifiers for secondary structure prediction

21 June 2018

1 reference

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Ab initio protein structure prediction of CASP III targets using ROSETTA

21 June 2018

1 reference

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Predicting protein structure using only sequence information.

21 June 2018

1 reference

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Protein secondary structure prediction based on position-specific scoring matrices

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

JPred: a consensus secondary structure prediction server

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Hidden Markov models for detecting remote protein homologies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Prediction of local structure in proteins using a library of sequence-structure motifs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Knowledge-based protein secondary structure assignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Prediction of protein secondary structure at better than 70% accuracy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

The complexity and accuracy of discrete state models of protein structure

21 June 2018

1 reference

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21 June 2018

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A simple method for displaying the hydropathic character of a protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Conformation of Polypeptides and Proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Prediction of protein conformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Principles that govern the folding of protein chains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Predicting the secondary structure of globular proteins using neural network models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Amino acid substitution matrices from protein blocks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Selection of representative protein data sets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Real-SPINE: an integrated system of neural networks for real-value prediction of protein structural properties.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

YASSPP: better kernels and coding schemes lead to improvements in protein secondary structure prediction.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Predicting protein secondary structure and solvent accessibility with an improved multiple linear regression method.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

A simple and fast secondary structure prediction method using hidden neural networks.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

A novel method for protein secondary structure prediction using dual-layer SVM and profiles.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Protein secondary structure prediction based on an improved support vector machines approach

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Secondary structure prediction with support vector machines.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Protein threading using PROSPECT: design and evaluation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

An automated classification of the structure of protein loops.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Improving prediction of protein secondary structure using structured neural networks and multiple sequence alignments.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Protein Structural Motif Prediction in Multidimensional ø-ψ Space Leads to Improved Secondary Structure Prediction

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811710

Protein secondary structure prediction with dihedral angles

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20025785

12 December 2020

inferred from PubMed ID database lookup

Multiple linear regression for protein secondary structure prediction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20025785

12 December 2020

inferred from PubMed ID database lookup

Alignments grow, secondary structure prediction improves

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20025785

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2105-10-437

1 reference

journals/bmcbi/KountourisH09

27 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

27 July 2017

1 reference