(Q33564434)

28 July 2017

title

Going beyond clustering in MD trajectory analysis: an application to villin headpiece folding (English)

1 reference

28 July 2017

3

Klaus Schulten

1 reference

28 July 2017

1

Aruna Rajan

1 reference

28 July 2017

Peter L Freddolino

2

1 reference

28 July 2017

language of work or name

English

0 references

publication date

15 April 2010

1 reference

28 July 2017

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28 July 2017

volume

5

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28 July 2017

issue

4

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28 July 2017

page(s)

e9890

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

15 April 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Common structural transitions in explicit-solvent simulations of villin headpiece folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2855342

Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics

21 June 2018

1 reference

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One-dimensional barrier-preserving free-energy projections of a beta-sheet miniprotein: new insights into the folding process

21 June 2018

1 reference

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Multiple routes and structural heterogeneity in protein folding

21 June 2018

1 reference

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Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

21 June 2018

1 reference

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Ten-microsecond molecular dynamics simulation of a fast-folding WW domain

21 June 2018

1 reference

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Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins

21 June 2018

1 reference

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Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece

21 June 2018

1 reference

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Understanding ensemble protein folding at atomic detail

21 June 2018

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Sub-microsecond protein folding

21 June 2018

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GROMACS: fast, flexible, and free

21 June 2018

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Computational cluster validation in post-genomic data analysis

21 June 2018

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Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

21 June 2018

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Phylogeny of protein-folding trajectories reveals a unique pathway to native structure

21 June 2018

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The protein folding 'speed limit'.

21 June 2018

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Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

21 June 2018

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Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations

21 June 2018

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A novel meta-analysis method exploiting consistency of high-throughput experiments.

21 June 2018

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Relational patterns of gene expression via non-metric multidimensional scaling analysis.

31 October 2018

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Statistical clustering techniques for the analysis of long molecular dynamics trajectories: analysis of 2.2-ns trajectories of YPGDV.

31 October 2018

1 reference

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Molecular dynamics of native protein. II. Analysis and nature of motion

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20419160

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

2D Entropy of Discrete Molecular Ensembles

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20419160

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Large-amplitude nonlinear motions in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20419160

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0009890

1 reference

28 July 2017

0 references

1 reference

28 July 2017

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