(Q33580753)

28 July 2017

Phylogeny of protein-folding trajectories reveals a unique pathway to native structure (English)

1 reference

28 July 2017

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0 references

1 reference

Motonori Ota

1

1 reference

28 July 2017

Mitsunori Ikeguchi

series ordinal

2

1 reference

28 July 2017

Akinori Kidera

series ordinal

3

1 reference

28 July 2017

language of work or name

English

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publication date

10 December 2004

1 reference

Proceedings of the National Academy of Sciences of the United States of America

28 July 2017

1 reference

28 July 2017

101

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28 July 2017

51

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28 July 2017

17658-17663

1 reference

Collapse and search dynamics of apomyoglobin folding revealed by submillisecond observations of alpha-helical content and compactness.

28 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Atomically detailed folding simulation of the B domain of staphylococcal protein A from random structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Trp-cage: Folding free energy landscape in explicit water

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Solvent viscosity dependence of the folding rate of a small protein: distributed computing study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Peptide folding simulations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

The Trp cage: folding kinetics and unfolded state topology via molecular dynamics simulations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Absolute comparison of simulated and experimental protein-folding dynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Conformational transition states of a beta-hairpin peptide between the ordered and disordered conformations in explicit water

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

All-Atom Structure Prediction and Folding Simulations of a Stable Protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Molecular dynamics simulations of biomolecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Protein and peptide folding explored with molecular simulations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Designing a 20-residue protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Protein folding and unfolding at atomic resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Protein folding intermediates and pathways studied by hydrogen exchange

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Submillisecond protein folding kinetics studied by ultrarapid mixing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Navigating the folding routes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Characterizing transition states in protein folding: an essential step in the puzzle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

The nature of protein folding pathways: the classical versus the new view

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Principles of protein folding--a perspective from simple exact models.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Automated assembly of protein blocks for database searching

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=539736

Folding of the villin headpiece subdomain from random structures. Analysis of the charge distribution as a function of pH.

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407015102

Essential dynamics of reversible peptide folding: memory-free conformational dynamics governed by internal hydrogen bonds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407015102

Ab initio folding simulation of the Trp-cage mini-protein approaches NMR resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407015102

An improved algorithm for matching biological sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0407015102

The burst-phase intermediate in the refolding of beta-lactoglobulin studied by stopped-flow circular dichroism and absorption spectroscopy

21 January 2018

1 reference

12 December 2020

Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing

1 reference

12 December 2020

Theory and applications of the generalized Born solvation model in macromolecular simulations

1 reference

12 December 2020

Ring and zipper formation is the key to understanding the structural variety in all-beta proteins

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0407015102

1 reference

release_d5lpknrtvzffjkeuajhgb6nxcm

28 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/d5lpknrtvzffjkeuajhgb6nxcm

24 November 2022

mapped directly with Wikidata item

PMCID

539736

1 reference

28 July 2017

1 reference