(Q33582647)

28 July 2017

title

Discrimination of thermophilic and mesophilic proteins (English)

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28 July 2017

Iosif I Vaisman

2

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author name string

Todd J Taylor

series ordinal

1

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28 July 2017

language of work or name

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17 May 2010

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28 July 2017

published in

BMC Structural Biology

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28 July 2017

volume

10 Suppl 1

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28 July 2017

page(s)

S5

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Protein and DNA sequence determinants of thermophilic adaptation

28 July 2017

cites work

1 reference

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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A simple topological representation of protein structure: implications for new, fast, and robust structural classification.

21 June 2018

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Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point

21 June 2018

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Voronoi and Voronoi-related tessellations in studies of protein structure and interaction

21 June 2018

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21 June 2018

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Extremophiles as a source for novel enzymes

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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The stability of thermophilic proteins: a study based on comprehensive genome comparison

21 June 2018

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Four-body potentials reveal protein-specific correlations to stability changes caused by hydrophobic core mutations.

21 June 2018

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21 June 2018

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Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium

21 June 2018

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The crystal structure of triosephosphate isomerase (TIM) from Thermotoga maritima: a comparative thermostability structural analysis of ten different TIM structures

21 June 2018

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Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability

21 June 2018

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The packing density in proteins: standard radii and volumes.

21 June 2018

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Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species

21 June 2018

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Enhanced thermal stability of Clostridium beijerinckii alcohol dehydrogenase after strategic substitution of amino acid residues with prolines from the homologous thermophilic Thermoanaerobacter brockii alcohol dehydrogenase

21 June 2018

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The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins

21 June 2018

1 reference

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Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

21 June 2018

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Protein thermostability above 100 degreesC: a key role for ionic interactions

21 June 2018

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Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape.

21 June 2018

1 reference

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Collective dynamics of 'small-world' networks

21 June 2018

1 reference

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Engineering an enzyme to resist boiling

21 June 2018

1 reference

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Statistical geometry analysis of proteins: implications for inverted structure prediction.

21 June 2018

1 reference

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The crystal structure of citrate synthase from the hyperthermophilic archaeon pyrococcus furiosus at 1.9 A resolution,

21 June 2018

1 reference

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Statistical significance of hierarchical multi-body potentials based on Delaunay tessellation and their application in sequence-structure alignment

21 June 2018

1 reference

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Two new examples of protein structural similarities within the structure-function twilight zone

21 June 2018

1 reference

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The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization

21 June 2018

1 reference

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Structural basis for thermostability and identification of potential active site residues for adenylate kinases from the archaeal genus Methanococcus.

21 June 2018

1 reference

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Delaunay tessellation of proteins: four body nearest-neighbor propensities of amino acid residues

21 June 2018

1 reference

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21 June 2018

1 reference

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Determinants of enzyme thermostability observed in the molecular structure of Thermus aquaticus D-glyceraldehyde-3-phosphate dehydrogenase at 25 Angstroms Resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

The structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

The optimization of protein-solvent interactions: thermostability and the role of hydrophobic and electrostatic interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Protein structure comparison by alignment of distance matrices

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Recognition of errors in three-dimensional structures of proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Classical electrostatics in biology and chemistry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Are buried salt bridges important for protein stability and conformational specificity?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Thermus aquaticus gen. n. and sp. n., a nonsporulating extreme thermophile

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Amino acid coupling patterns in thermophilic proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Preferred amino acids and thermostability.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Accurate classification of protein structural families using coherent subgraph analysis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Simplicial neighborhood analysis of protein packing (SNAPP): a computational geometry approach to studying proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Development of a four-body statistical pseudo-potential to discriminate native from non-native protein conformations.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Genomic correlates of hyperthermostability, an update.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Small-world view of the amino acids that play a key role in protein folding.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Charge-charge interactions influence the denatured state ensemble and contribute to protein stability

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Factors enhancing protein thermostability

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Protein thermostability in extremophiles

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Proteins from thermophilic and mesophilic organisms essentially do not differ in packing

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

The crystal structure of citrate synthase from the thermophilic archaeon, Thermoplasma acidophilum

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Structural and Genomic Correlates of Hyperthermostability

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2873828

Single surface stabilizer

10 December 2018

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12 December 2020

Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2

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12 December 2020

Analysis of protein conformational characteristics related to thermostability

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12 December 2020

Protein thermal stability, hydrogen bonds, and ion pairs

1 reference

12 December 2020

Novel method to detect a motif of local structures in different protein conformations

1 reference

12 December 2020

10.1186/1472-6807-10-S1-S5

Identifiers

DOI

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Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

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