(Q33584087)

28 July 2017

title

Comprehensive evaluation and optimization of amplicon library preparation methods for high-throughput antibody sequencing (English)

1 reference

28 July 2017

1 reference

1 reference

Ulrike Menzel

1

0 references

Mark Pogson

Mark Pogson

8

0 references

Victor Greiff

Victor Greiff

2

0 references

Sai T Reddy

Sai T Reddy

9

0 references

author name string

Tarik A Khan

3

1 reference

28 July 2017

Ulrike Haessler

4

1 reference

28 July 2017

Ina Hellmann

5

1 reference

28 July 2017

Simon Friedensohn

6

1 reference

28 July 2017

Skylar C Cook

7

1 reference

28 July 2017

language of work or name

English

0 references

publication date

8 May 2014

1 reference

28 July 2017

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28 July 2017

volume

9

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28 July 2017

issue

5

1 reference

28 July 2017

page(s)

e96727

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

8 May 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ggplot2

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4014543

ggplot2

2 references

10 June 2022

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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1 reference

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21 June 2018

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The promise and challenge of high-throughput sequencing of the antibody repertoire.

21 June 2018

1 reference

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Beyond model antigens: high-dimensional methods for the analysis of antigen-specific T cells

21 June 2018

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The role of replicates for error mitigation in next-generation sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing

21 June 2018

1 reference

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Biases in small RNA deep sequencing data

21 June 2018

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A novel approach to tracking antigen-experienced CD4 T cells into functional compartments via tandem deep and shallow TCR clonotyping

21 June 2018

1 reference

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21 June 2018

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Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

21 June 2018

1 reference

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IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling

21 June 2018

1 reference

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Genetic measurement of memory B-cell recall using antibody repertoire sequencing

21 June 2018

1 reference

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Correlation of gene expression and genome mutation in single B-cells

21 June 2018

1 reference

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Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations

21 June 2018

1 reference

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Comparative analysis of RNA sequencing methods for degraded or low-input samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response

21 June 2018

1 reference

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Antibody isolation from immunized animals: comparison of phage display and antibody discovery via V gene repertoire mining

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Detection of ultra-rare mutations by next-generation sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

PANDAseq: paired-end assembler for illumina sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Counting absolute numbers of molecules using unique molecular identifiers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Rep-Seq: uncovering the immunological repertoire through next-generation sequencing.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Barcoding bias in high-throughput multiplex sequencing of miRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Vaccination-induced changes in human B-cell repertoire and pneumococcal IgM and IgA antibody at different ages.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Widespread RNA and DNA sequence differences in the human transcriptome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Systems analysis of adaptive immunity by utilization of high-throughput technologies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Different B cell populations mediate early and late memory during an endogenous immune response

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Comprehensive comparative analysis of strand-specific RNA sequencing methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

High-throughput sequencing of the zebrafish antibody repertoire

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

A large genome center's improvements to the Illumina sequencing system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

IMGT, the international ImMunoGeneTics information system.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Isolation of engineered, full-length antibodies from libraries expressed in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Adaptation of humoral memory

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Efficient amplification and direct sequencing of mouse variable regions from any immunoglobulin gene family

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Reliable cloning of functional antibody variable domains from hybridomas and spleen cell repertoires employing a reengineered phage display system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

How many specific B cells are needed to protect against a virus?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4014543

Using synthetic templates to design an unbiased multiplex PCR assay.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0096727

IgG variable region and VH CDR3 diversity in unimmunized mice analyzed by massively parallel sequencing

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0096727

Practical innovations for high-throughput amplicon sequencing.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0096727

A proteomics approach for the identification and cloning of monoclonal antibodies from serum

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24809667

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0096727

1 reference

28 July 2017

0 references

1 reference

28 July 2017

1 reference