(Q33619186)

28 July 2017

title

Multiscale coarse-graining of the protein energy landscape (English)

1 reference

28 July 2017

1 reference

3

Gregory A Voth

1 reference

28 July 2017

Ronald D Hills

1

1 reference

28 July 2017

Lanyuan Lu

series ordinal

2

1 reference

28 July 2017

publication date

24 June 2010

1 reference

PLOS Computational Biology

28 July 2017

published in

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28 July 2017

volume

6

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28 July 2017

issue

6

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28 July 2017

page(s)

e1000827

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Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

24 June 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 June 2018

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Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism

21 June 2018

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21 June 2018

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A coarse-grained protein force field for folding and structure prediction.

21 June 2018

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21 June 2018

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21 June 2018

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Coarse-grained peptide modeling using a systematic multiscale approach

21 June 2018

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Multiscale coarse-graining and structural correlations: connections to liquid-state theory

21 June 2018

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Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations

21 June 2018

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Conformational transitions of adenylate kinase: switching by cracking

21 June 2018

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Symmetry, form, and shape: guiding principles for robustness in macromolecular machines.

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Balancing energy and entropy: a minimalist model for the characterization of protein folding landscapes

21 June 2018

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Theory of protein folding

21 June 2018

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Development of novel statistical potentials for protein fold recognition

21 June 2018

1 reference

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The origins of asymmetry in the folding transition states of protein L and protein G.

21 June 2018

1 reference

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Designing a 20-residue protein

21 June 2018

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Tryptophan zippers: Stable, monomeric -hairpins

21 June 2018

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Three-helix-bundle protein in a Ramachandran model

21 June 2018

1 reference

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VMD: visual molecular dynamics

21 June 2018

1 reference

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A test of lattice protein folding algorithms

21 June 2018

1 reference

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Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2891700

The MARTINI Coarse-Grained Force Field: Extension to Proteins.

21 June 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

Orientation-dependent potential of mean force for protein folding

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

Pairwise energies for polypeptide coarse-grained models derived from atomic force fields.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

Multiscale coarse graining of liquid-state systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

Deriving effective mesoscale potentials from atomistic simulations.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

A Bayesian statistics approach to multiscale coarse graining.

21 January 2018

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Replica-exchange molecular dynamics method for protein folding

21 January 2018

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Mapping all-atom models onto one-bead Coarse Grained Models: general properties and applications to a minimal polypeptide model

21 January 2018

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A temperature predictor for parallel tempering simulations.

21 January 2018

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Representability problems for coarse-grained water potentials.

21 January 2018

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Self-assembling dipeptides: conformational sampling in solvent-free coarse-grained simulation.

21 January 2018

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Self-assembling dipeptides: including solvent degrees of freedom in a coarse-grained model

21 January 2018

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Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins

21 January 2018

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Cooperativity principles in protein folding.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

Desolvation barrier effects are a likely contributor to the remarkable diversity in the folding rates of small proteins

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

A free-energy approach for all-atom protein simulation

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

Folding simulations of Trp-cage mini protein in explicit solvent using biasing potential replica-exchange molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

Energy landscape of the trpzip2 peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000827

Toward a Coarse-Grained Protein Model Coupled with a Coarse-Grained Solvent Model: Solvation Free Energies of Amino Acid Side Chains

21 January 2018

1 reference

12 December 2020

A Coarse-Grained Model Based on Morse Potential for Water and n-Alkanes

1 reference

12 December 2020

Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition

1 reference

12 December 2020

A coarse-grained protein-protein potential derived from an all-atom force field

1 reference

12 December 2020

Peptide folding using multiscale coarse-grained models

1 reference

12 December 2020

A multiscale coarse-graining method for biomolecular systems

1 reference

12 December 2020

Another look at the conditions for the extraction of protein knowledge-based potentials

1 reference

12 December 2020

Calculation of effective interaction potentials from radial distribution functions: A reverse Monte Carlo approach

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1000827

Identifiers

DOI

1 reference

journals/ploscb/HillsLV10

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference