(Q33629914)

28 July 2017

title

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics (English)

1 reference

28 July 2017

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1 reference

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Aidan MacNamara

5

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Thomas Cokelaer

Thomas Cokelaer

3

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Jose A. Egea

Jose A Egea

Alejandro Fernández Villaverde

1

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Alejandro F Villaverde

4

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Julio Saez-Rodriguez

Julio Saez-Rodriguez

8

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Julio R. Banga

Julio R Banga

7

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Diana-Patricia Danciu

Diana-Patricia Danciu

6

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author name string

David Henriques

2

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28 July 2017

publication date

10 May 2014

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28 July 2017

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28 July 2017

volume

15

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28 July 2017

page(s)

136

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https://scigraph.springernature.com/pub.10.1186/1471-2105-15-136

28 July 2017

exact match

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cites work

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Mathematical modeling of biochemical systems with PottersWheel

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Incremental parameter estimation of kinetic metabolic network models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

A detailed modular analysis of heat-shock protein dynamics under acute and chronic stress and its implication in anxiety disorders

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

State-time spectrum of signal transduction logic models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Multi-criteria optimization of regulation in metabolic networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

A cooperative strategy for parameter estimation in large scale systems biology models.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Modeling the intracellular dynamics of influenza virus replication to understand the control of viral RNA synthesis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Modeling cortisol dynamics in the neuro-endocrine axis distinguishes normal, depression, and post-traumatic stress disorder (PTSD) in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

AMIGO, a toolbox for advanced model identification in systems biology using global optimization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Parameter estimation using meta-heuristics in systems biology: a comprehensive review

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Vulnerabilities in the tau network and the role of ultrasensitive points in tau pathophysiology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

An iterative identification procedure for dynamic modeling of biochemical networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Identifying drug effects via pathway alterations using an integer linear programming optimization formulation on phosphoproteomic data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Computational design tools for synthetic biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Systems biology: parameter estimation for biochemical models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Parameter estimation and optimal experimental design.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Optimization in computational systems biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

On some optimization problems in molecular biology.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Machine learning in bioinformatics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

A methodology for the structural and functional analysis of signaling and regulatory networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Parameter estimation in biochemical pathways: a comparison of global optimization methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology.

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-136

An optimal experimental design approach to model discrimination in dynamic biochemical systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-136

Parameter estimation of kinetic models from metabolic profiles: two-phase dynamic decoupling method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-136

A single compartment model of pacemaking in dissasociated substantia nigra neurons: stability and energy analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-136

Properties of cell death models calibrated and compared using Bayesian approaches

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4025564

Differential Evolution – A Simple and Efficient Heuristic for global Optimization over Continuous Spaces

30 October 2018

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-15-136

Smolign: a spatial motifs-based protein multiple structural alignment method

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-15-136

An evolutionary method for complex-process optimization

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-15-136

Variable neighbourhood search: methods and applications

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-15-136

Variable neighborhood search

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-15-136

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2105-15-136

Identifiers

DOI

10.1186/1471-2105-15-136

1 reference

journals/bmcbi/EgeaHCVMDBS14

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

28 July 2017

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