(Q33650108)

English

Congruency between Biophysical Data from Multiple Platforms and Molecular Dynamics Simulation of the Double-Super Helix Model of Nascent High-Density Lipoprotein

scientific article published on August 31, 2010

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Congruency between biophysical data from multiple platforms and molecular dynamics simulation of the double-super helix model of nascent high-density lipoprotein (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Congruency between Biophysical Data from Multiple Platforms and Molecular Dynamics Simulation of the Double-Super Helix Model of Nascent High-Density Lipoprotein (English)

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

4

object named as

Vitaliy Pipich

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

author name string

Valentin Gogonea

1

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Zhiping Wu

2

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Xavier Lee

3

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Xin-Min Li

5

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Alexander I. Ioffe

6

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

Joseph A. Didonato

7

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

Stanley L. Hazen

8

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

language of work or name

0 references

publication date

1 August 2010

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

31 August 2010

1 reference

National Center for Biotechnology Information

PubMed publication ID

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20687589

17 June 2024

full work available at URL

https://europepmc.org/articles/pmc2940317?pdf=render

Portable Document Format

online access status

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20687589/?tool=EBI

online access status

content deliverer

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20687589/pdf/?tool=EBI

Portable Document Format

online access status

content deliverer

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

https://europepmc.org/articles/PMC2940317

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

https://europepmc.org/articles/PMC2940317?pdf=render

Portable Document Format

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

https://doi.org/10.1021/bi100588a

online access status

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20687589

17 June 2024

https://pubs.acs.org/doi/pdf/10.1021/bi100588a

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

49

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

34

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

7323-7343

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Structures of discoidal high density lipoproteins: a combined computational-experimental approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Helical structure and stability in human apolipoprotein A-I by hydrogen exchange and mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Double Superhelix Model of High Density Lipoprotein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Thermal stability of apolipoprotein A-I in high-density lipoproteins by molecular dynamics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

United we stand: combining structural methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

HDL, ABC transporters, and cholesterol efflux: implications for the treatment of atherosclerosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Molecular models need to be tested: the case of a solar flares discoidal HDL model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

The structure of the C-terminal actin-binding domain of talin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Assembly of lipids and proteins into lipoprotein particles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Conformational adaptation of apolipoprotein A-I to discretely sized phospholipid complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Setting up and running molecular dynamics simulations of membrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Mechanisms of disease: HDL metabolism as a target for novel therapies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Hydrogen exchange and mass spectrometry: A historical perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Relationship between the concentration and antiatherogenic activity of high-density lipoproteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Molecular organization in micelles and vesicles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Novel changes in discoidal high density lipoprotein morphology: a molecular dynamics study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Role of apoA-I, ABCA1, LCAT, and SR-BI in the biogenesis of HDL.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Coarse grained protein-lipid model with application to lipoprotein particles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Transmembrane protein structures without X-rays.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

HDL cholesterol and protective factors in atherosclerosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

ApoA-I structure on discs and spheres. Variable helix registry and conformational states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Formation of unilamellar vesicles by repetitive freeze-thaw cycles: characterization by electron microscopy and 31P-nuclear magnetic resonance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

The role of the high-density lipoprotein receptor SR-BI in cholesterol metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Predicting the structure of apolipoprotein A-I in reconstituted high-density lipoprotein disks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Reduced surface: an efficient way to compute molecular surfaces

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Primary structure effects on peptide group hydrogen exchange

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

13C nuclear magnetic resonance spectroscopy of native and recombined lipoproteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Lipid polymorphism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Lateral diffusion of phospholipids in the lipid surface of human low-density lipoprotein measured with a pyrenyl phospholipid probe.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

The folding of hen lysozyme involves partially structured intermediates and multiple pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Lipid polymorphism and the functional roles of lipids in biological membranes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

21 June 2018

Structural features and dynamics properties of human apolipoprotein A-I in a model of synthetic HDL.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Size and shape of detergent micelles determined by small-angle X-ray scattering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

The refined structure of nascent HDL reveals a key functional domain for particle maturation and dysfunction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Apolipoprotein E*dipalmitoylphosphatidylcholine particles are ellipsoidal in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Tyrosine modification is not required for myeloperoxidase-induced loss of apolipoprotein A-I functional activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Intermolecular contact between globular N-terminal fold and C-terminal domain of ApoA-I stabilizes its lipid-bound conformation: studies employing chemical cross-linking and mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Localization of nitration and chlorination sites on apolipoprotein A-I catalyzed by myeloperoxidase in human atheroma and associated oxidative impairment in ABCA1-dependent cholesterol efflux from macrophages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Identification and structural ramifications of a hinge domain in apolipoprotein A-I discoidal high-density lipoproteins of different size

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Molecular dynamics simulations on discoidal HDL particles suggest a mechanism for rotation in the apo A-I belt model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Molecular dynamics simulations of stratum corneum lipid models: fatty acids and cholesterol

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Micellar complexes of human apolipoprotein A-I with phosphatidylcholines and cholesterol prepared from cholate-lipid dispersions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2940317

30 October 2018

Phospholipid composition of reconstituted high density lipoproteins influences their ability to inhibit endothelial cell adhesion molecule expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/20687589

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics simulation of a phospholipid micelle

1 reference

https://pubmed.ncbi.nlm.nih.gov/20687589

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Development of hydrophobicity parameters to analyze proteins which bear post- or cotranslational modifications

1 reference

https://pubmed.ncbi.nlm.nih.gov/20687589

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Apolipoprotein A-I assumes a "looped belt" conformation on reconstituted high density lipoprotein

1 reference

https://pubmed.ncbi.nlm.nih.gov/20687589

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polymorphism of Lecithins

1 reference

https://pubmed.ncbi.nlm.nih.gov/20687589

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A detailed molecular belt model for apolipoprotein A-I in discoidal high density lipoprotein

1 reference

https://pubmed.ncbi.nlm.nih.gov/20687589

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A mass spectrometric determination of the conformation of dimeric apolipoprotein A-I in discoidal high density lipoproteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/20687589

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structure of human lipoprotein A-I. Evidence for the "belt" model

1 reference

https://pubmed.ncbi.nlm.nih.gov/20687589

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformation of an endogenous ligand in a membrane bilayer for the macrophage scavenger receptor CD36

1 reference

https://pubmed.ncbi.nlm.nih.gov/20687589

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

La diffraction des rayons X aux très petits angles : application à l'étude de phénomènes ultramicroscopiques

31

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

GROMACS 3.0: a package for molecular simulation and trajectory analysis

36

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

41

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

Molecular dynamics with coupling to an external bath

42

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

LINCS: A linear constraint solver for molecular simulations

43

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models

44

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

Reduced surface: An efficient way to compute molecular surfaces

49

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

Small-angle scattering studies of biological macromolecules in solution

65

1 reference

10.1021/BI100588A

https://api.crossref.org/works/10.1021/BI100588A

17 June 2024

Identifiers

10.1021/BI100588A

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q33650108&oldid=2181960790"