(Q33715673)

28 July 2017

0 references

Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum (English)

1 reference

28 July 2017

whole genome sequencing

1 reference

inferred from title

Penicillium chrysogenum

object named as

Penicillium chrysogenum

1 reference

Fu-Qiang Wang

1

1 reference

28 July 2017

Jun Zhong

2

1 reference

28 July 2017

Ying Zhao

3

1 reference

28 July 2017

Jingfa Xiao

4

1 reference

28 July 2017

Jing Liu

5

1 reference

28 July 2017

Meng Dai

6

1 reference

28 July 2017

Guizhen Zheng

7

1 reference

28 July 2017

Li Zhang

8

1 reference

28 July 2017

Jun Yu

9

1 reference

28 July 2017

Jiayan Wu

10

1 reference

28 July 2017

Baoling Duan

11

1 reference

28 July 2017

language of work or name

English

0 references

publication date

24 January 2014

1 reference

28 July 2017

1 reference

28 July 2017

15 Suppl 1

1 reference

28 July 2017

S11

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-s1-s11

28 July 2017

0 references

cites work

The enzymes of β-lactam biosynthesis

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Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities

21 June 2018

1 reference

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Impact of the Penicillium chrysogenum genome on industrial production of metabolites

21 June 2018

1 reference

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Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

21 June 2018

1 reference

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Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

21 June 2018

1 reference

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Two components of a velvet-like complex control hyphal morphogenesis, conidiophore development, and penicillin biosynthesis in Penicillium chrysogenum

21 June 2018

1 reference

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Proteome analysis of the penicillin producer Penicillium chrysogenum: characterization of protein changes during the industrial strain improvement

21 June 2018

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

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Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

21 June 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

21 June 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

21 June 2018

1 reference

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SNP detection for massively parallel whole-genome resequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Application of 'next-generation' sequencing technologies to microbial genetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

CNV-seq, a new method to detect copy number variation using high-throughput sequencing

21 June 2018

1 reference

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Exploring and dissecting genome-wide gene expression responses of Penicillium chrysogenum to phenylacetic acid consumption and penicillinG production

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Next-generation DNA sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

SOAP: short oligonucleotide alignment program

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

KAAS: an automatic genome annotation and pathway reconstruction server

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

WEGO: a web tool for plotting GO annotations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Transcriptional and bioinformatic analysis of the 56.8 kb DNA region amplified in tandem repeats containing the penicillin gene cluster in Penicillium chrysogenum.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Penicillin: II. Natural Variation and Penicillin Production in Penicillium notatum and Allied Species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

BTA, a novel reagent for DNA attachment on glass and efficient generation of solid-phase amplified DNA colonies.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Repbase Update, a database of eukaryotic repetitive elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Genome sequencing in microfabricated high-density picolitre reactors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

InterProScan: protein domains identifier

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Regulation of penicillin biosynthesis in filamentous fungi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Sequencing and comparison of yeast species to identify genes and regulatory elements

21 June 2018

1 reference

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The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

High-quality protein knowledge resource: SWISS-PROT and TrEMBL.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

BLAT—The BLAST-Like Alignment Tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

InterProScan--an integration platform for the signature-recognition methods in InterPro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Reduced function of a phenylacetate-oxidizing cytochrome p450 caused strong genetic improvement in early phylogeny of penicillin-producing strains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Ab initio gene finding in Drosophila genomic DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Drug discovery: a historical perspective

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Tandem repeats finder: a program to analyze DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Molecular regulation of beta-lactam biosynthesis in filamentous fungi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Base-calling of automated sequencer traces using phred. II. Error probabilities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Proteins of the penicillin biosynthesis pathway

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Human whole-genome shotgun sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Resolution of four large chromosomes in penicillin-producing filamentous fungi: the penicillin gene cluster is located on chromosome II (9.6 Mb) in Penicillium notatum and chromosome I (10.4 Mb) in Penicillium chrysogenum.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

The penicillin gene cluster is amplified in tandem repeats linked by conserved hexanucleotide sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Classics in infectious diseases: on the antibacterial action of cultures of a penicillium, with special reference to their use in the isolation of B. influenzae by Alexander Fleming, Reprinted from the British Journal of Experimental Pathology [...]

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

DNA sequencing with chain-terminating inhibitors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4046689

Functional characterization of the penicillin biosynthetic gene cluster of Penicillium chrysogenum Wisconsin54-1255.

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-S1-S11

SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-S1-S11

A metabolome study of the steady-state relation between central metabolism, amino acid biosynthesis and penicillin production in Penicillium chrysogenum

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-S1-S11

The global regulator LaeA controls penicillin biosynthesis, pigmentation and sporulation, but not roquefortine C synthesis in Penicillium chrysogenum

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-S1-S11

MapView: visualization of short reads alignment on a desktop computer

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-S1-S11

Overproduction of a single protein, Pc-Pex11p, results in 2-fold enhanced penicillin production by Penicillium chrysogenum

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24564352

12 December 2020

inferred from PubMed ID database lookup

Large amplification of a 35-kb DNA fragment carrying two penicillin biosynthetic genes in high penicillin producing strains of Penicillium chrysogenum

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24564352

12 December 2020

inferred from PubMed ID database lookup

The genome of an industrial workhorse

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24564352

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2164-15-S1-S11

1 reference

journals/bmcgenomics/WangZZXLDZZYWD14

28 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-s1-s11

9 September 2019

1 reference

28 July 2017

1 reference