(Q33744631)

29 July 2017

title

Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs (English)

1 reference

29 July 2017

2

1 reference

29 July 2017

13

1 reference

29 July 2017

Jörg Hackermüller

1

0 references

Kurt Engeland

Kurt Engeland

12

0 references

Peter Ahnert

Peter Ahnert

10

0 references

Christian Otto

3

Christian Otto

1 reference

29 July 2017

Nadine Hösler

4

1 reference

29 July 2017

Conny Blumert

5

1 reference

29 July 2017

Katja Brocke-Heidrich

6

1 reference

29 July 2017

Levin Böhlig

7

1 reference

29 July 2017

Anne Nitsche

8

1 reference

29 July 2017

Katharina Kasack

9

1 reference

29 July 2017

Wolfgang Krupp

11

1 reference

29 July 2017

Friedemann Horn

14

1 reference

29 July 2017

publication date

4 March 2014

1 reference

29 July 2017

1 reference

29 July 2017

volume

15

1 reference

29 July 2017

issue

3

1 reference

29 July 2017

page(s)

R48

1 reference

describes a project that uses

29 July 2017

limma

R package limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4054595

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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21 June 2018

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21 June 2018

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p53 can repress transcription of cell cycle genes through a p21(WAF1/CIP1)-dependent switch from MMB to DREAM protein complex binding at CHR promoter elements

21 June 2018

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21 June 2018

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21 June 2018

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Long noncoding RNAs are rarely translated in two human cell lines

21 June 2018

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21 June 2018

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Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development

21 June 2018

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The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult

21 June 2018

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Detection of differentially expressed segments in tiling array data

21 June 2018

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Perspectives of Long Non-Coding RNAs in Cancer Diagnostics

21 June 2018

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A downstream CpG island controls transcript initiation and elongation and the methylation state of the imprinted Airn macro ncRNA promoter

21 June 2018

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MEG3 noncoding RNA: a tumor suppressor

21 June 2018

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Mechanisms of long range silencing by imprinted macro non-coding RNAs.

21 June 2018

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A central role for long non-coding RNA in cancer

21 June 2018

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Overexpression of SET is a recurrent event associated with poor outcome and contributes to protein phosphatase 2A inhibition in acute myeloid leukemia

21 June 2018

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An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs

21 June 2018

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The CHR promoter element controls cell cycle-dependent gene transcription and binds the DREAM and MMB complexes.

21 June 2018

1 reference

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Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

21 June 2018

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The tumor suppressor p53 induces expression of the pregnancy-supporting human chorionic gonadotropin (hCG) CGB7 gene.

21 June 2018

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Fast transcription rates of RNA polymerase II in human cells

21 June 2018

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A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA

21 June 2018

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

21 June 2018

1 reference

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lincRNAs act in the circuitry controlling pluripotency and differentiation

21 June 2018

1 reference

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The reality of pervasive transcription

21 June 2018

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Dephosphorylation of the nuclear factor of activated T cells (NFAT) transcription factor is regulated by an RNA-protein scaffold complex

21 June 2018

1 reference

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Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

21 June 2018

1 reference

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21 June 2018

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The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

lncRNAdb: a reference database for long noncoding RNAs

21 June 2018

1 reference

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Expression of distinct RNAs from 3' untranslated regions

21 June 2018

1 reference

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Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome

21 June 2018

1 reference

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Long noncoding RNAs with enhancer-like function in human cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

p53 activates the PANK1/miRNA-107 gene leading to downregulation of CDK6 and p130 cell cycle proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Most "dark matter" transcripts are associated with known genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Characterization of the RNA content of chromatin

21 June 2018

1 reference

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Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation

21 June 2018

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Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor

21 June 2018

1 reference

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21 June 2018

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21 June 2018

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Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness

21 June 2018

1 reference

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Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry

21 June 2018

1 reference

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

21 June 2018

1 reference

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An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

21 June 2018

1 reference

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

21 June 2018

1 reference

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P53 mRNA controls p53 activity by managing Mdm2 functions

21 June 2018

1 reference

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Regulation of neural macroRNAs by the transcriptional repressor REST.

21 June 2018

1 reference

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RNAalifold: improved consensus structure prediction for RNA alignments

21 June 2018

1 reference

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Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

21 June 2018

1 reference

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Dinucleotide controlled null models for comparative RNA gene prediction

21 June 2018

1 reference

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The 2007 WHO classification of tumours of the central nervous system

21 June 2018

1 reference

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Activation of p53 by MEG3 non-coding RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Interleukin-6 dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Genome-wide transcription and the implications for genomic organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

STAT3 as a central mediator of neoplastic cellular transformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Using GOstats to test gene lists for GO term association

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Identification and classification of conserved RNA secondary structures in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

The transcriptional landscape of the mammalian genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Fast and reliable prediction of noncoding RNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Detecting selection in noncoding regions of nucleotide sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Aligning multiple genomic sequences with the threaded blockset aligner

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Interleukin-6-dependent gene expression profiles in multiple myeloma INA-6 cells reveal a Bcl-2 family-independent survival pathway closely associated with Stat3 activation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Multiple sequence alignment with the Clustal series of programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

BLAT—The BLAST-Like Alignment Tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

The Ensembl genome database project

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Identification and classification of p53-regulated genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Association of transcription factor APRF and protein kinase Jak1 with the interleukin-6 signal transducer gp130.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Acute-Phase Response Factor, a Nuclear Factor Binding to Acute-Phase Response Elements, is Rapidly Activated by Interleukin-6 at the Posttranslational Level

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

A new player SETs in myeloid malignancy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054595

30 October 2018

Identifiers

DOI

10.1186/GB-2014-15-3-R48

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference