(Q33744975)

29 July 2017

title

Arabidopsis replacement histone variant H3.3 occupies promoters of regulated genes (English)

1 reference

29 July 2017

Lorenzo Borghi

4

0 references

Miyuki Nakamura

object named as

Miyuki Nakamura

2

0 references

Lars Hennig

object named as

Lars Hennig

8

0 references

Wilhelm Gruissem

object named as

Wilhelm Gruissem

7

0 references

author name string

Huan Shu

1

1 reference

29 July 2017

Alexey Siretskiy

3

1 reference

29 July 2017

Izabel Moraes

5

1 reference

29 July 2017

Thomas Wildhaber

6

1 reference

29 July 2017

publication date

21 March 2014

1 reference

29 July 2017

1 reference

29 July 2017

volume

15

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29 July 2017

issue

4

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29 July 2017

page(s)

R62

1 reference

Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells

29 July 2017

cites work

1 reference

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H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin.

14 July 2018

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Arabidopsis MSI1 connects LHP1 to PRC2 complexes

14 July 2018

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The ASYMMETRIC LEAVES complex maintains repression of KNOX homeobox genes via direct recruitment of Polycomb-repressive complex2.

14 July 2018

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Nucleosome-depleted chromatin gaps recruit assembly factors for the H3.3 histone variant

14 July 2018

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14 July 2018

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Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome

14 July 2018

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14 July 2018

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Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma

14 July 2018

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Four amino acids guide the assembly or disassembly of Arabidopsis histone H3.3-containing nucleosomes

14 July 2018

1 reference

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The double face of the histone variant H3.3.

14 July 2018

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Histone variants and modifications in plant gene regulation

14 July 2018

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The evolutionary history of histone H3 suggests a deep eukaryotic root of chromatin modifying mechanisms

14 July 2018

1 reference

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Heterochromatin formation in the mouse embryo requires critical residues of the histone variant H3.3

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres

14 July 2018

1 reference

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Relationship between nucleosome positioning and DNA methylation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones

14 July 2018

1 reference

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Distinct factors control histone variant H3.3 localization at specific genomic regions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Histone variants--ancient wrap artists of the epigenome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

New functions for an old variant: no substitute for histone H3.3.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

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14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Genome-wide demethylation of Arabidopsis endosperm.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Inducible deposition of the histone variant H3.3 in interferon-stimulated genes.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Divergent transcription from active promoters

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

The histone variant H3.3 regulates gene expression during lytic infection with herpes simplex virus type 1.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Genic and global functions for Paf1C in chromatin modification and gene expression in Arabidopsis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Histone chaperones: an escort network regulating histone traffic

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Tetrameric structure of centromeric nucleosomes in interphase Drosophila cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Nucleosome stability mediated by histone variants H3.3 and H2A.Z.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Model-based analysis of tiling-arrays for ChIP-chip.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Pause sites promote transcriptional termination of mammalian RNA polymerase II

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Maize rough sheath2 and its Arabidopsis orthologue ASYMMETRIC LEAVES1 interact with HIRA, a predicted histone chaperone, to maintain knox gene silencing and determinacy during organogenesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

A gene expression map of Arabidopsis thaliana development

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Transcriptional activation triggers deposition and removal of the histone variant H3.3.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Phylogenomics of the nucleosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

A novel labeling technique reveals a function for histone H2A/H2B dimer tail domains in chromatin assembly in vivo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Histone H4 acetylation of euchromatin and heterochromatin is cell cycle dependent and correlated with replication rather than with transcription

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Genome-scale profiling of histone H3.3 replacement patterns.

14 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-4-R62

Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-4-R62

Cell cycle-dependent accumulation of histone H3.3 and euchromatic histone modifications in pericentromeric heterochromatin in response to a decrease in DNA methylation levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-4-R62

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-4-R62

Histone H3.3 deposition at E2F-regulated genes is linked to transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-4-R62

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-4-R62

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FGB-2014-15-4-R62

Evolution of histone H3: emergence of variants and conservation of post-translational modification sites.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Native chromatin immunoprecipitation

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Genome-wide gene expression in an Arabidopsis cell suspension.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Distinct modes of DNA accessibility in plant chromatin

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054674

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24708891

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24708891

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2014-15-4-R62

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference