(Q33751936)

29 July 2017

title

Peptide binding predictions for HLA DR, DP and DQ molecules (English)

1 reference

29 July 2017

Morten Nielsen

6

0 references

Alessandro Sette

series ordinal

4

object named as

Alessandro Sette

1 reference

29 July 2017

7

Bjoern Peters

1 reference

29 July 2017

Ole Lund

5

0 references

Peng Wang

object named as

Peng Wang

series ordinal

1

0 references

John Sidney

series ordinal

2

object named as

John Sidney

1 reference

29 July 2017

3

Yohan Kim

1 reference

29 July 2017

publication date

22 November 2010

1 reference

29 July 2017

1 reference

29 July 2017

volume

11

1 reference

29 July 2017

page(s)

568

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-11-568

29 July 2017

exact match

0 references

cites work

Divergent motifs but overlapping binding repertoires of six HLA-DQ molecules frequently expressed in the worldwide human population

1 reference

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MHC class II epitope predictive algorithms.

21 June 2018

1 reference

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Limitations of Ab initio predictions of peptide binding to MHC class II molecules

21 June 2018

1 reference

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Five HLA-DP molecules frequently expressed in the worldwide human population share a common HLA supertypic binding specificity

21 June 2018

1 reference

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NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Human MHC architecture and evolution: implications for disease association studies

21 June 2018

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A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

21 June 2018

1 reference

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Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

21 June 2018

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Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

21 June 2018

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NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

21 June 2018

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21 June 2018

1 reference

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21 June 2018

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21 June 2018

1 reference

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A community resource benchmarking predictions of peptide binding to MHC-I molecules

21 June 2018

1 reference

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MHC class II proteins and disease: a structural perspective

21 June 2018

1 reference

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Prediction of MHC class II binding peptides based on an iterative learning model

21 June 2018

1 reference

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21 June 2018

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21 June 2018

1 reference

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Computational methods for prediction of T-cell epitopes--a framework for modelling, testing, and applications

21 June 2018

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Towards in silico prediction of immunogenic epitopes

21 June 2018

1 reference

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21 June 2018

1 reference

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21 June 2018

1 reference

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Genomic organization of the mammalian MHC.

21 June 2018

1 reference

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21 June 2018

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Global analysis of proteasomal substrate specificity using positional-scanning libraries of covalent inhibitors.

21 June 2018

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21 June 2018

1 reference

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21 June 2018

1 reference

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Several common HLA-DR types share largely overlapping peptide binding repertoires

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

MHCPEP, a database of MHC-binding peptides: update 1997.

21 June 2018

1 reference

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Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

Assembly, transport, and function of MHC class II molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

Measuring the accuracy of diagnostic systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

The MHC: relationship between linkage and function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

Rapid identification of high affinity peptide ligands using positional scanning synthetic peptide combinatorial libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

Selection of representative protein data sets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

A probabilistic meta-predictor for the MHC class II binding peptides.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

A consensus strategy for combining HLA-DR binding algorithms

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2998531

Single amino acid changes in DR and antigen define residues critical for peptide-MHC binding and T cell recognition

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21092157

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-11-568

1 reference

journals/bmcbi/WangSKSLNP10

29 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

29 July 2017

1 reference