(Q30388353)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

review article

1 reference

title

MHC class II epitope predictive algorithms (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

0 references

1

1 reference

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31 January 2020

Ole Lund

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Soren Buus

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

4

Claus Lundegaard

1 reference

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31 January 2020

publication date

12 April 2010

1 reference

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31 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

volume

130

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

page(s)

319-328

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31 January 2020

issue

3

1 reference

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Antigen presentation by MHC class II molecules: invariant chain function, protein trafficking, and the molecular basis of diverse determinant capture

31 January 2020

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Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

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21 January 2018

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

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Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores

21 January 2018

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Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties

21 January 2018

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Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

21 January 2018

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Prediction of MHC class II binding peptides based on an iterative learning model

21 January 2018

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Peptide length-based prediction of peptide-MHC class II binding.

21 January 2018

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Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction.

21 January 2018

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Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms

21 January 2018

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21 January 2018

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A probabilistic meta-predictor for the MHC class II binding peptides.

21 January 2018

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A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

21 January 2018

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Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Naturally processed HLA class II peptides reveal highly conserved immunogenic flanking region sequence preferences that reflect antigen processing rather than peptide-MHC interactions.

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

21 January 2018

1 reference

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The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding

21 January 2018

1 reference

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Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan

21 January 2018

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Shift-invariant adaptive double threading: learning MHC II-peptide binding

21 January 2018

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Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research

21 January 2018

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Sequence logos: a new way to display consensus sequences

21 January 2018

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21 January 2018

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The MHC motif viewer: a visualization tool for MHC binding motifs

21 January 2018

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Identifying HLA supertypes by learning distance functions.

21 January 2018

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Identifiying human MHC supertypes using bioinformatic methods.

21 January 2018

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Definition of supertypes for HLA molecules using clustering of specificity matrices.

21 January 2018

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Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism

21 January 2018

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HLA class I supertypes: a revised and updated classification

21 January 2018

1 reference

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Broadly immunogenic HLA class I supertype-restricted elite CTL epitopes recognized in a diverse population infected with different HIV-1 subtypes.

21 January 2018

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Extensive HLA class I allele promiscuity among viral CTL epitopes

21 January 2018

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Essential differences in ligand presentation and T cell epitope recognition among HLA molecules of the HLA-B44 supertype

21 January 2018

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The peptide-binding specificity of HLA-A*3001 demonstrates membership of the HLA-A3 supertype

21 January 2018

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Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors.

21 January 2018

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EpiJen: a server for multistep T cell epitope prediction

21 January 2018

1 reference

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Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

21 January 2018

1 reference

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An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

21 January 2018

1 reference

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Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

21 January 2018

1 reference

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Validation of in silico prediction by in vitro immunoserological results of fine epitope mapping on citrate synthase specific autoantibodies

21 January 2018

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Promiscuous T cell epitope prediction of Candida albicans secretory aspartyl protienase family of proteins.

21 January 2018

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Searching for borrelial T cell epitopes associated with antibiotic-refractory Lyme arthritis

21 January 2018

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Human CD4+ T cell epitopes from vaccinia virus induced by vaccination or infection

21 January 2018

1 reference

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Competition between two MHC binding registers in a single peptide processed from myelin basic protein influences tolerance and susceptibility to autoimmunity.

21 January 2018

1 reference

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Prediction of MHC class I binding peptides using profile motifs.

21 January 2018

1 reference

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SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.

21 January 2018

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EpiToolKit--a web server for computational immunomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03268.X

Limitations of Ab initio predictions of peptide binding to MHC class II molecules

21 January 2018

1 reference

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Binding of biotinylated peptides to MHC class II proteins on cell surfaces

26 November 2018

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Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules.

26 November 2018

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In silico prediction of peptides binding to multiple HLA-DR molecules accurately identifies immunodominant epitopes from gp43 of Paracoccidioides brasiliensis frequently recognized in primary peripheral blood mononuclear cell responses from sensitiz

26 November 2018

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Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

26 November 2018

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26 November 2018

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Oligopeptide antigens of the angiotensin lineage compete for presentation by paraformaldehyde-treated accessory cells to T cells

26 November 2018

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Binding of immunogenic peptides to Ia histocompatibility molecules

26 November 2018

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Prediction of peptide affinity to HLA DRB1*0401

21 January 2018

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12 December 2020

Capacity of intact proteins to bind to MHC class II molecules

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12 December 2020

Amino-terminal flanking residues determine the conformation of a peptide-class II MHC complex

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12 December 2020

MHC molecules protect T cell epitopes against proteolytic destruction

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12 December 2020

HLA supertypes and supermotifs: a functional perspective on HLA polymorphism

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12 December 2020

ProPred analysis and experimental evaluation of promiscuous T-cell epitopes of three major secreted antigens of Mycobacterium tuberculosis

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12 December 2020

Structural analysis of a peptide--HLA class II complex: identification of critical interactions for its formation and recognition by T cell receptor

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12 December 2020

Immunogenicity of peptides bound to MHC class I molecules depends on the MHC-peptide complex stability

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12 December 2020

The IMGT/HLA database

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12 December 2020

Computer-assisted prediction of HLA-DR binding and experimental analysis for human promiscuous Th1-cell peptides in the 24 kDa secreted lipoprotein (LppX) of Mycobacterium tuberculosis

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12 December 2020

10.1111/J.1365-2567.2010.03268.X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20408898%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

0 references

1 reference