(Q33762995)

29 July 2017

title

Altering the interaction between sigma70 and RNA polymerase generates complexes with distinct transcription-elongation properties (English)

1 reference

29 July 2017

3

Carol A Gross

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29 July 2017

author name string

Yvonne Berghöfer-Hochheimer

series ordinal

1

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29 July 2017

Chi Zen Lu

series ordinal

2

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29 July 2017

language of work or name

English

0 references

publication date

13 January 2005

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29 July 2017

number of pages

6

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Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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29 July 2017

volume

102

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29 July 2017

issue

4

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29 July 2017

page(s)

1157-1162

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describes a project that uses

29 July 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC545856/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Crystal structure of the flagellar sigma/anti-sigma complex sigma(28)/FlgM reveals an intact sigma factor in an inactive conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Backtracking by single RNA polymerase molecules observed at near-base-pair resolution

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

RNA polymerase mutations that impair conversion to a termination-resistant complex by Q antiterminator proteins

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

RNA polymerase holoenzyme: structure, function and biological implications

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Conformational-relaxation models of single-enzyme kinetics

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

The many conformational states of RNA polymerase elongation complexes and their roles in the regulation of transcription

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Using disulfide bond engineering to study conformational changes in the beta'260-309 coiled-coil region of Escherichia coli RNA polymerase during sigma(70) binding.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Structure of the bacterial RNA polymerase promoter specificity sigma subunit

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Structure-based analysis of RNA polymerase function: the largest subunit's rudder contributes critically to elongation complex stability and is not involved in the maintenance of RNA-DNA hybrid length

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Restructuring of an RNA polymerase holoenzyme elongation complex by lambdoid phage Q proteins

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

22 June 2018

Bacterial RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Memory landscapes of single-enzyme molecules

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Antitermination by bacteriophage lambda Q protein

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

The functional and regulatory roles of sigma factors in transcription

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

A surface of Escherichia coli sigma 70 required for promoter function and antitermination by phage lambda Q protein

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Basic mechanisms of transcript elongation and its regulation

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Domain organization of the Escherichia coli RNA polymerase sigma 70 subunit

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Quantitative analysis of transcriptional pausing by Escherichia coli RNA polymerase: his leader pause site as paradigm

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Function of E. coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Mapping and characterization of transcriptional pause sites in the early genetic region of bacteriophage T7.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Release of the sigma subunit from Escherichia coli RNA polymerase transcription complexes is dependent on the promoter sequence

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Release of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase depends mainly on time elapsed after the start of initiation, not on length of product RNA.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Polypeptides containing highly conserved regions of transcription initiation factor σ70 exhibit specificity of binding to promoter DNA

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving polymin P precipitation and DNA-cellulose chromatography

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Purification and properties of the .sigma. subunit of Escherichia coli DNA-dependent RNA polymerase

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process

22 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

The sigma 70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

Diversity in the Rates of Transcript Elongation by Single RNA Polymerase Molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

Transcription processivity: protein-DNA interactions holding together the elongation complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

Termination of transcription by Escherichia coli ribonucleic acid polymerase in vitro. Effect of altered reaction conditions and mutations in the enzyme protein on termination with T7 and T3 deoxyribonucleic acids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

Mutational analysis of beta '260-309, a sigma 70 binding site located on Escherichia coli core RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

A coiled-coil from the RNA polymerase beta' subunit allosterically induces selective nontemplate strand binding by sigma(70).

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408973102

Isolation and characterization of sigma(70)-retaining transcription elongation complexes from Escherichia coli

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545856

Role of the sigma subunit of Escherichia coli RNA polymerase in initiation. II. Release of sigma from ternary complexes

30 October 2018

1 reference

12 December 2020

Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit

1 reference

12 December 2020

Core RNA polymerase from E. coli induces a major change in the domain arrangement of the sigma 70 subunit

1 reference

12 December 2020

Mechanism of intrinsic transcription termination and antitermination

1 reference

12 December 2020

Interaction with free beta' subunit unmasks DNA-binding domain of RNA polymerase sigma subunit

1 reference

12 December 2020

The phage lambda gene Q transcription antiterminator binds DNA in the late gene promoter as it modifies RNA polymerase

1 reference

12 December 2020

Function of a nontranscribed DNA strand site in transcription elongation

1 reference

12 December 2020

Function of transcription cleavage factors GreA and GreB at a regulatory pause site

1 reference

12 December 2020

The downstream DNA jaw of bacterial RNA polymerase facilitates both transcriptional initiation and pausing

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0408973102

1 reference

29 July 2017

0 references

1 reference

29 July 2017

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