(Q33783695)

29 July 2017

title

De novo self-assembling collagen heterotrimers using explicit positive and negative design (English)

1 reference

29 July 2017

1 reference

Fei Xu

1

0 references

Ronald L Koder

object named as

Ronald L Koder

series ordinal

3

0 references

Vikas Nanda

object named as

Vikas Nanda

series ordinal

4

0 references

author name string

Lei Zhang

series ordinal

2

1 reference

29 July 2017

language of work or name

English

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publication date

1 March 2010

1 reference

29 July 2017

1 reference

29 July 2017

volume

49

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29 July 2017

issue

11

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29 July 2017

page(s)

2307-2316

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Design of protein-interaction specificity gives selective bZIP-binding peptides.

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Synthetic collagen heterotrimers: structural mimics of wild-type and mutant collagen type I.

4 July 2018

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4 July 2018

Mammalian collagen IV

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Surprisingly high stability of collagen ABC heterotrimer: evaluation of side chain charge pairs

4 July 2018

1 reference

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The collagen family members as cell adhesion proteins

4 July 2018

1 reference

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Optimization by Simulated Annealing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Positive and negative design in stability and thermal adaptation of natural proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Specificity versus stability in computational protein design

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Computational protein design is a challenge for implicit solvation models

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

The HP-1 maquette: from an apoprotein structure to a structured hemoprotein designed to promote redox-coupled proton exchange

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Equilibrium thermal transitions of collagen model peptides

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Basement membranes: structure, assembly and role in tumour angiogenesis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

A new twist in the collagen story--the type VI segmented supercoil

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Amino acid propensities for the collagen triple-helix

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Sticky-end assembly of a designed peptide fiber provides insight into protein fibrillogenesis.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Effects of salt bridges on protein structure and design.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Real-time NMR investigations of triple-helix folding and collagen folding diseases

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Solvent hydrogen-bond network in protein self-assembly: solvation of collagen triple helices in nonaqueous solvents

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Design and synthesis of heterotrimeric collagen peptides with a built-in cystine-knot. Models for collagen catabolism by matrix-metalloproteases.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Hydration structure of a collagen peptide

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Engineering of stable and fast-folding sequences of model proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

A new approach to the design of stable proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Optimal sequence selection in proteins of known structure by simulated evolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Analysis of the primary structure of collagen for the origins of molecular packing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Fundamental periodicities in the amino acid sequence of the collagen alpha1 chain

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

D-periodic collagen-mimetic microfibers.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Protein stability and surface electrostatics: a charged relationship.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Prediction of collagen stability from amino acid sequence

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Electrostatic interactions involving lysine make major contributions to collagen triple-helix stability

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Energy functions for protein design I: efficient and accurate continuum electrostatics and solvation

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Automated design of specificity in molecular recognition

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Conformational stability of collagen relies on a stereoelectronic effect.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

A designed heterotrimeric coiled coil

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Code for collagen's stability deciphered

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853261

Determination of binding stoichiometry by the continuous variation method: the Job plot

30 October 2018

1 reference

12 December 2020

Computational de novo design, and characterization of an A(2)B(2) diiron protein

1 reference

12 December 2020

Self-assembled heterotrimeric collagen triple helices directed through electrostatic interactions

1 reference

12 December 2020

De novo protein design. II. Plasticity in sequence space

1 reference

12 December 2020

Design of proteins with selected thermal properties

1 reference

12 December 2020

The molecular structure of collagen

1 reference

12 December 2020

Conformational implications of amino acid sequence regularities in collagen

1 reference

12 December 2020

Positional preferences of ionizable residues in Gly-X-Y triplets of the collagen triple-helix

1 reference

12 December 2020

Electrostatic interactions in collagen-like triple-helical peptides

1 reference

12 December 2020

Structural properties of a collagenous heterotrimer that mimics the collagenase cleavage site of collagen type I

1 reference

12 December 2020

Optimal Protein Design Procedure

1 reference

12 December 2020

Contribution of the alpha2 chain to the molecular stability of collagen

1 reference

12 December 2020

The collagen-like peptide (GER)15GPCCG forms pH-dependent covalently linked triple helical trimers

1 reference

12 December 2020

Gly-Pro-Arg confers stability similar to Gly-Pro-Hyp in the collagen triple-helix of host-guest peptides

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI902077D

1 reference

29 July 2017

1 reference

29 July 2017

1 reference