(Q33785748)

29 July 2017

The effect of micrococcal nuclease digestion on nucleosome positioning data (English)

1 reference

29 July 2017

8

Martin Vingron

1 reference

29 July 2017

Ho-Ryun Chung

1

1 reference

29 July 2017

Ilona Dunkel

2

1 reference

29 July 2017

Franziska Heise

3

1 reference

29 July 2017

Christian Linke

4

1 reference

29 July 2017

Sylvia Krobitsch

5

1 reference

29 July 2017

Ann E Ehrenhofer-Murray

6

1 reference

29 July 2017

Silke R Sperling

7

1 reference

29 July 2017

language of work or name

English

0 references

publication date

29 December 2010

1 reference

29 July 2017

1 reference

29 July 2017

5

1 reference

29 July 2017

e15754

1 reference

29 July 2017

12

1 reference

Creative Commons Attribution 4.0 International

29 July 2017

start time

29 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

G+C content dominates intrinsic nucleosome occupancy

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

RazerS--fast read mapping with sensitivity control

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Nucleosome positioning: how is it established, and why does it matter?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Genome-wide views of chromatin structure

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Poly(dA:dT) tracts: major determinants of nucleosome organization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

The DNA-encoded nucleosome organization of a eukaryotic genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Nucleosome positioning in human HOX gene clusters

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Nucleosome organization in the Drosophila genome.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Dynamic regulation of nucleosome positioning in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Chromatin remodelling at promoters suppresses antisense transcription

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

A high-resolution atlas of nucleosome occupancy in yeast

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Nucleosome positioning signals in genomic DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Genome-scale identification of nucleosome positions in S. cerevisiae

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Transcriptional regulatory code of a eukaryotic genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Assays for nucleosome positioning in yeast

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Crystal structure of the nucleosome core particle at 2.8 A resolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Sequence specific cleavage of DNA by micrococcal nuclease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Chromatin fine structure of the histone gene complex of Drosophila melanogaster

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

High sequence specificity of micrococcal nuclease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Organization of theGAL1–GAL10intergeaic control region chromatin

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Chromatin Structure: A Repeating Unit of Histones and DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Spectroscopic studies on histone-DNA interactions. II. Three transitions in nucleosomes resolved by salt-titration.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Upstream activation sequence-dependent alteration of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Cleavage of DNA in nuclei and chromatin with staphylococcal nuclease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.

4 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015754

Analysis of Drosophila chromatin structure in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015754

High-throughput mapping of the chromatin structure of human promoters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015754

Sequence-dependent nucleosome positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015754

Nucleosome structure and repair of N-methylpurines in the GAL1-10 genes of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015754

Nucleosomal locations of dominant DNA sequence motifs for histone-DNA interactions and nucleosome positioning.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0015754

Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3012088

Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae

30 October 2018

1 reference

12 December 2020

Structure of chromatin

1 reference

12 December 2020

Non-random cleavage of SV40 DNA in the compact minichromosome and free in solution by micrococcal nuclease

1 reference

12 December 2020

Sequence sensitivity of histone binding

1 reference

12 December 2020

Location of the primary sites of micrococcal nuclease cleavage on the nucleosome core

1 reference

12 December 2020

In vivo analysis of chromatin structure

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0015754

Identifiers

DOI

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference