(Q33791116)

29 July 2017

title

Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm (English)

1 reference

29 July 2017

1 reference

Supatcha Lertampaiporn

1

1 reference

29 July 2017

Chinae Thammarongtham

2

1 reference

29 July 2017

Chakarida Nukoolkit

3

1 reference

29 July 2017

Boonserm Kaewkamnerdpong

4

1 reference

29 July 2017

Marasri Ruengjitchatchawalya

5

1 reference

29 July 2017

language of work or name

English

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publication date

25 April 2014

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29 July 2017

published in

Nucleic Acids Research

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29 July 2017

volume

42

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29 July 2017

issue

11

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29 July 2017

page(s)

e93

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Creative Commons Attribution-NonCommercial 4.0 International

29 July 2017

copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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4 July 2018

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Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs

4 July 2018

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Clustering RNA structural motifs in ribosomal RNAs using secondary structural alignment

4 July 2018

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From structure prediction to genomic screens for novel non-coding RNAs

4 July 2018

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RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.

4 July 2018

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Non-coding RNAs as regulators of embryogenesis

4 July 2018

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Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data

4 July 2018

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4 July 2018

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Non-coding RNA detection methods combined to improve usability, reproducibility and precision

4 July 2018

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Non-coding RNAs: Meet thy masters

4 July 2018

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4 July 2018

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The tedious task of finding homologous noncoding RNA genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

From consensus structure prediction to RNA gene finding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

The use of covariance models to annotate RNAs in whole genomes

4 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Evidence for a major role of antisense RNAs in cyanobacterial gene regulation

4 July 2018

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De novo computational prediction of non-coding RNA genes in prokaryotic genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

The long and the short of noncoding RNAs

4 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

smyRNA: a novel Ab initio ncRNA gene finder

4 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Infernal 1.0: inference of RNA alignments

4 July 2018

1 reference

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Regulatory RNAs in bacteria

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Long non-coding RNAs: insights into functions

4 July 2018

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Non-coding RNA prediction and verification in Saccharomyces cerevisiae

4 July 2018

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Self containment, a property of modular RNA structures, distinguishes microRNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Conditional variable importance for random forests

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

De novo search for non-coding RNA genes in the AT-rich genome of Dictyostelium discoideum: performance of Markov-dependent genome feature scoring

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Considerations in the identification of functional RNA structural elements in genomic alignments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Bias in random forest variable importance measures: illustrations, sources and a solution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Machine learning in bioinformatics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Identification and classification of conserved RNA secondary structures in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

CMfinder--a covariance model based RNA motif finding algorithm

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Sequence-based heuristics for faster annotation of non-coding RNA families.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

A comparison of RNA folding measures.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Fast and reliable prediction of noncoding RNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

MSARI: multiple sequence alignments for statistical detection of RNA secondary structure

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Data mining in bioinformatics using Weka

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Noncoding RNA genes identified in AT-rich hyperthermophiles

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

An expanding universe of noncoding RNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Searching for RNA genes using base-composition statistics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Noncoding RNA gene detection using comparative sequence analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

RNA sequence analysis using covariance models

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

Basic local alignment search tool

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4066759

PSoL: a positive sample only learning algorithm for finding non-coding RNA genes.

4 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU325

Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU325

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU325

Structural profiles of human miRNA families from pairwise clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU325

LocARNA-P: accurate boundary prediction and improved detection of structural RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU325

21 January 2018

Identifiers

DOI

10.1093/NAR/GKU325

1 reference

29 July 2017

1 reference

29 July 2017

1 reference