(Q33798902)

29 July 2017

title

Length bias correction for RNA-seq data in gene set analyses (English)

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29 July 2017

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Xiangqin Cui

5

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author name string

Liyan Gao

1

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29 July 2017

Zhide Fang

2

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29 July 2017

Kui Zhang

3

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29 July 2017

Degui Zhi

4

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29 July 2017

language of work or name

English

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publication date

19 January 2011

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29 July 2017

number of pages

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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29 July 2017

volume

27

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29 July 2017

issue

5

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29 July 2017

page(s)

662-669

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Differential expression analysis for sequence count data

29 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Gene ontology analysis for RNA-seq: accounting for selection bias

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

RNA-seq: from technology to biology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Transcript length bias in RNA-seq data confounds systems biology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Statistical inferences for isoform expression in RNA-Seq

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

RNA-Seq: a revolutionary tool for transcriptomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Stem cell transcriptome profiling via massive-scale mRNA sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Mapping and quantifying mammalian transcriptomes by RNA-Seq

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Moderated statistical tests for assessing differences in tag abundance

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Noise in protein expression scales with natural protein abundance

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Microarray data analysis: from disarray to consolidation and consensus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3042188

10.1093/BIOINFORMATICS/BTR005

4 July 2018

Identifiers

DOI

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journals/bioinformatics/GaoFZZC11

29 July 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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29 July 2017

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