(Q33828431)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649474%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

title

Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649474%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

1 reference

high-throughput sequencing

1 reference

based on heuristic

inferred from title

United States Virgin Islands

1 reference

Peter J Edmunds

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649474%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

language of work or name

English

0 references

publication date

21 June 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649474%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649474%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649474%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

page(s)

e3472

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649474%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

23 March 2020

copyright license

start time

21 June 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

phyloseq

object named as

phyloseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Biogeography and molecular diversity of coral symbionts in the genus Symbiodinium around the Arabian Peninsula

1 reference

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Maternal effects and Symbiodinium community composition drive differential patterns in juvenile survival in the coral Acropora tenuis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Symbiodinium biogeography tracks environmental patterns rather than host genetics in a key Caribbean reef-builder, Orbicella annularis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Recovery from bleaching is mediated by threshold densities of background thermo-tolerant symbiont types in a reef-building coral

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

New species of Clade B Symbiodinium (Dinophyceae) from the greater Caribbean belong to different functional guilds: S. aenigmaticum sp. nov., S. antillogorgium sp. nov., S. endomadracis sp. nov., and S. pseudominutum sp. nov.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

A Trait-Based Approach to Advance Coral Reef Science

4 July 2018

1 reference

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Variability of Symbiodinium Communities in Waters, Sediments, and Corals of Thermally Distinct Reef Pools in American Samoa

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Assessing Symbiodinium diversity in scleractinian corals via next-generation sequencing-based genotyping of the ITS2 rDNA region

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

New insights into the dynamics between reef corals and their associated dinoflagellate endosymbionts from population genetic studies

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Exploring Symbiodinium diversity and host specificity in Acropora corals from geographical extremes of Western Australia with 454 amplicon pyrosequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Deep-sequencing method for quantifying background abundances of symbiodinium types: exploring the rare symbiodinium biosphere in reef-building corals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Host-specialist lineages dominate the adaptive radiation of reef coral endosymbionts

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides) from different reef environments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Symbiotic specificity, association patterns, and function determine community responses to global changes: defining critical research areas for coral-Symbiodinium symbioses

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

A filtering method to generate high quality short reads using illumina paired-end technology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

SymbioGBR: a web-based database of Symbiodinium associated with cnidarian hosts on the Great Barrier Reef

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Molecular delineation of species in the coral holobiont

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Improved resolution of reef-coral endosymbiont (Symbiodinium) species diversity, ecology, and evolution through psbA non-coding region genotyping

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Genotypic diversity and spatial-temporal distribution of Symbiodinium clones in an abundant reef coral

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Search and clustering orders of magnitude faster than BLAST

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

The relative significance of host-habitat, depth, and geography on the ecology, endemism, and speciation of coral endosymbionts in the genus Symbiodinium

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

QIIME allows analysis of high-throughput community sequencing data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'i

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral 'bleaching' event

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Cohesive molecular genetic data delineate species diversity in the dinoflagellate genus Symbiodinium

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Heterotrophy in tropical scleractinian corals.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

"Species" radiations of symbiotic dinoflagellates in the Atlantic and Indo-Pacific since the Miocene-Pliocene transition

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Coral reefs: corals' adaptive response to climate change.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

MUSCLE: multiple sequence alignment with high accuracy and high throughput

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Fine-scale diversity and specificity in the most prevalent lineage of symbiotic dinoflagellates (Symbiodinium, Dinophyceae) of the Caribbean

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5482262

Multivariate dispersion as a measure of beta diversity.

4 July 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Flexibility and specificity in coral-algal symbiosis: diversity, ecology, and biogeography of Symbiodinium

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Investigating the causes and consequences of symbiont shuffling in a multi-partner reef coral symbiosis under environmental change.

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Molecular drive in multigene families: How biological novelties arise, spread and are assimilated

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Graph drawing by force-directed placement

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

An Introduction to the Near–Real–Time QuikSCAT Data

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

INVESTIGATING THE BIODIVERSITY, ECOLOGY, AND PHYLOGENY OF ENDOSYMBIOTIC DINOFLAGELLATES IN THE GENUS SYMBIODINIUM USING THE ITS REGION: IN SEARCH OF A "SPECIES" LEVEL MARKER

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodinium

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals.

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Coral bleaching: thermal adaptation in reef coral symbionts

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Niche partitioning of closely related symbiotic dinoflagellates.

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Specificity is rarely absolute in coral-algal symbiosis: implications for coral response to climate change.

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Specificity in communities of Symbiodinium in corals from Johnston Atoll

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversion

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Physiological correlates of ecological divergence along an urbanization gradient: differential tolerance to ammonia among molecular forms of the malaria mosquito Anopheles gambiae

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Symbiodinium population genetics: testing for species boundaries and analysing samples with mixed genotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Predicting the distribution of Montastraea reefs using wave exposure

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Tradeoffs to Thermal Acclimation: Energetics and Reproduction of a Reef Coral with Heat TolerantSymbiodiniumType-D

21 January 2018

1 reference

https://api.crossref.org/works/10.7717%2FPEERJ.3472

Phylogenetic identification of symbiotic dinoflagellates via length heteroplasmy in domain V of chloroplast large subunit (cp23S)-ribosomal DNA sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28649474

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Functional significance of genetically different symbiotic algae Symbiodinium in a coral reef symbiosis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28649474

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7717/PEERJ.3472

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649474%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28649474%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

PubMed publication ID

28649474

1 reference