(Q34844958)

25052021

4 August 2017

title

Assessing Symbiodinium diversity in scleractinian corals via next-generation sequencing-based genotyping of the ITS2 rDNA region (English)

1 reference

4 August 2017

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Till Bayer

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

Eulalia Banguera-Hinestroza

13 June 2020

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Adrian Barbrook

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Todd C. LaJeunesse

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

Christian R. Voolstra

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

6

Christopher J Howe

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

author name string

Chatchanit Arif

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

publication date

18 August 2014

1 reference

4 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

volume

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

issue

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

page(s)

4418-4433

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

New insights into the dynamics between reef corals and their associated dinoflagellate endosymbionts from population genetic studies

13 June 2020

cites work

1 reference

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Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico

8 July 2018

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Exploring Symbiodinium diversity and host specificity in Acropora corals from geographical extremes of Western Australia with 454 amplicon pyrosequencing

8 July 2018

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Deep-sequencing method for quantifying background abundances of symbiodinium types: exploring the rare symbiodinium biosphere in reef-building corals

8 July 2018

1 reference

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Host-specialist lineages dominate the adaptive radiation of reef coral endosymbionts

8 July 2018

1 reference

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Population genetic data of a model symbiotic cnidarian system reveal remarkable symbiotic specificity and vectored introductions across ocean basins

8 July 2018

1 reference

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The effect of primer choice and short read sequences on the outcome of 16S rRNA gene based diversity studies

8 July 2018

1 reference

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Distribution-based clustering: using ecology to refine the operational taxonomic unit

8 July 2018

1 reference

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Host-specific interactions with environmental factors shape the distribution of symbiodinium across the Great Barrier Reef

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

SymbioGBR: a web-based database of Symbiodinium associated with cnidarian hosts on the Great Barrier Reef

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Improved resolution of reef-coral endosymbiont (Symbiodinium) species diversity, ecology, and evolution through psbA non-coding region genotyping

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Genotypic diversity and spatial-temporal distribution of Symbiodinium clones in an abundant reef coral

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

UCHIME improves sensitivity and speed of chimera detection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Removing noise from pyrosequenced amplicons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Variation in Symbiodinium ITS2 sequence assemblages among coral colonies.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

The relative significance of host-habitat, depth, and geography on the ecology, endemism, and speciation of coral endosymbionts in the genus Symbiodinium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral 'bleaching' event

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Cohesive molecular genetic data delineate species diversity in the dinoflagellate genus Symbiodinium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Pyrosequencing enumerates and contrasts soil microbial diversity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates

8 July 2018

1 reference

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Recognizing diversity in coral symbiotic dinoflagellate communities

8 July 2018

1 reference

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Conservation genetics and the resilience of reef-building corals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Microbial diversity in the deep sea and the underexplored "rare biosphere"

8 July 2018

1 reference

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Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium

8 July 2018

1 reference

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

8 July 2018

1 reference

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Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt, and Detonula confervacea (cleve) Gran

8 July 2018

1 reference

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Zooxanthellae of the Montastraea annularis species complex: patterns of distribution of four taxa of Symbiodinium on different reefs and across depths

8 July 2018

1 reference

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Landscape ecology of algal symbionts creates variation in episodes of coral bleaching

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Intraspecific diversity and ecological zonation in coral-algal symbiosis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Ribosomal DNA: Molecular Evolution and Phylogenetic Inference

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Ribosomal RNA sequences and the diversity of symbiotic dinoflagellates (zooxanthellae)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285332

Flexibility and specificity in coral-algal symbiosis: diversity, ecology, and biogeography of Symbiodinium

8 July 2018

1 reference

The chloroplast genome of a Symbiodinium sp. clade C3 isolate

21 January 2018

1 reference

Molecular drive in multigene families: How biological novelties arise, spread and are assimilated

21 January 2018

1 reference

GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses

21 January 2018

1 reference

MICROSATELLITE GENOTYPING OF SINGLE CELLS OF THE DINOFLAGELLATE SPECIES LINGULODINIUM POLYEDRUM (DINOPHYCEAE): A NOVEL APPROACH FOR MARINE MICROBIAL POPULATION GENETIC STUDIES(1).

21 January 2018

1 reference

Genetics and morphology characterize the dinoflagellate Symbiodinium voratum, n. sp., (Dinophyceae) as the sole representative of Symbiodinium Clade E.

21 January 2018

1 reference

INVESTIGATING THE BIODIVERSITY, ECOLOGY, AND PHYLOGENY OF ENDOSYMBIOTIC DINOFLAGELLATES IN THE GENUS SYMBIODINIUM USING THE ITS REGION: IN SEARCH OF A "SPECIES" LEVEL MARKER

21 January 2018

1 reference

Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs

21 January 2018

1 reference

Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodinium

21 January 2018

1 reference

A genetics-based description of Symbiodinium minutum sp. nov. and S. psygmophilum sp. nov. (Dinophyceae), two dinoflagellates symbiotic with cnidaria.

21 January 2018

1 reference

Highly organized structure in the non-coding region of the psbA minicircle from clade C Symbiodinium

21 January 2018

1 reference

ASSIMILATION OF PHOTOSYNTHETIC PRODUCTS OF ZOOXANTHELLAE BY A REEF CORAL.

21 January 2018

1 reference

Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals.

21 January 2018

1 reference

Niche partitioning of closely related symbiotic dinoflagellates.

21 January 2018

1 reference

Molecular phylogeny of symbiotic dinoflagellates inferred from partial chloroplast large subunit (23S)-rDNA sequences.

21 January 2018

1 reference

Specificity in communities of Symbiodinium in corals from Johnston Atoll

21 January 2018

1 reference

Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversion

21 January 2018

1 reference

Preservation of corals in salt-saturated DMSO buffer is superior to ethanol for PCR experiments

21 January 2018

1 reference

Local endemicity and high diversity characterise high-latitude coral–Symbiodinium partnerships

21 January 2018

1 reference

Latitudinal variability in symbiont specificity within the widespread scleractinian coral Plesiastrea versipora

21 January 2018

1 reference

Latitudinal symbiont zonation in Stylophora pistillata from southeast Africa

21 January 2018

1 reference

Screening intragenomic rDNA for dominant variants can provide a consistent retrieval of evolutionarily persistent ITS (rDNA) sequences

21 January 2018

1 reference

Large-subunit ribosomal RNA systematics of symbiotic dinoflagellates: morphology does not recapitulate phylogeny

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25052021

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Patterns of coral-dinoflagellate associations in Acropora: significance of local availability and physiology of Symbiodinium strains and host-symbiont selectivity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25052021

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A molecular genetic classification of zooxanthellae and the evolution of animal-algal symbioses

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25052021

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1111/MEC.12869

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

25052021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25052021%20AND%20SRC:MED&resulttype=core&format=json