(Q33831056)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

title

ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

Nicolas Nègre

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

author name string

Eric Bishop

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

Peter V Karchenko

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

Kevin P White

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

Peter J Park

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

language of work or name

English

0 references

publication date

28 February 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

volume

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

page(s)

134

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

Evaluation of algorithm performance in ChIP-seq peak detection

23 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Genome-wide chromatin maps derived from limited numbers of hematopoietic progenitors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Heritable individual-specific and allele-specific chromatin signatures in humans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Variation in transcription factor binding among humans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Genome-wide prediction of transcription factor binding sites using an integrated model.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

rMAT--an R/Bioconductor package for analyzing ChIP-chip experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

ChIP-seq: advantages and challenges of a maturing technology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Mapping accessible chromatin regions using Sono-Seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Impact of chromatin structures on DNA processing for genomic analyses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Histone modifications at human enhancers reflect global cell-type-specific gene expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

An integrated software system for analyzing ChIP-chip and ChIP-seq data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Model-based analysis of ChIP-Seq (MACS)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Pre-processing Agilent microarray data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Mapping the distribution of chromatin proteins by ChIP on chip.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

High-resolution computational models of genome binding events.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Model-based analysis of tiling-arrays for ChIP-chip.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

FlyBase: genes and gene models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Transcriptional regulatory networks in Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Genome-wide location and function of DNA binding proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053263

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

High-resolution profiling of histone methylations in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

Model-based analysis of two-color arrays (MA2C).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

Inherent signals in sequencing-based Chromatin-ImmunoPrecipitation control libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

Unlocking the secrets of the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

Design and analysis of ChIP-seq experiments for DNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

Discover regulatory DNA elements using chromatin signatures and artificial neural network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-134

21 January 2018

Identifiers

DOI

10.1186/1471-2164-12-134

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

23 January 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-134

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21356108%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

PubMed publication ID

21356108

1 reference