(Q33836463)

29 July 2017

title

Electrostatic mechanism of nucleosomal array folding revealed by computer simulation (English)

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29 July 2017

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3

Tamar Schlick

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29 July 2017

Jian Sun

1

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29 July 2017

Qing Zhang

series ordinal

2

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29 July 2017

language of work or name

English

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publication date

26 May 2005

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

102

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29 July 2017

issue

23

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29 July 2017

page(s)

8180-8185

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Nucleosome arrays reveal the two-start organization of the chromatin fiber

29 July 2017

cites work

1 reference

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28 July 2018

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Effect of DNA superhelicity and bound proteins on mechanistic aspects of the Hin-mediated and Fis-enhanced inversion

28 July 2018

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Chromatin fibers, one-at-a-time

28 July 2018

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Structure and dynamic behavior of nucleosomes

28 July 2018

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Structures and interactions of the core histone tail domains

28 July 2018

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Cellular memory and the histone code

28 July 2018

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Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

28 July 2018

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Computer simulation of the 30-nanometer chromatin fiber.

28 July 2018

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Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions

28 July 2018

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Salt-induced conformation and interaction changes of nucleosome core particles.

28 July 2018

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Preferential interaction of the core histone tail domains with linker DNA.

28 July 2018

1 reference

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DNA folding: structural and mechanical properties of the two-angle model for chromatin

28 July 2018

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Dynamics of site juxtaposition in supercoiled DNA.

28 July 2018

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Review: chromatin structural features and targets that regulate transcription

28 July 2018

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Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure

28 July 2018

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Structure, dynamics, and function of chromatin in vitro

28 July 2018

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Chromatin fiber structure: morphology, molecular determinants, structural transitions.

28 July 2018

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Automated electron microscope tomography of frozen-hydrated chromatin: the irregular three-dimensional zigzag architecture persists in compact, isolated fibers

28 July 2018

1 reference

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Crystal structure of the nucleosome core particle at 2.8 A resolution

28 July 2018

1 reference

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What determines the folding of the chromatin fiber?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

A chromatin folding model that incorporates linker variability generates fibers resembling the native structures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Rearrangement of the histone H2A C-terminal domain in the nucleosome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Internal structure of the 30 nm chromatin fiber

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Participation of core histone "tails" in the stabilization of the chromatin solenoid

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Structure of chromatin and the linking number of DNA.

28 July 2018

1 reference

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A defined structure of the 30 nm chromatin fibre which accommodates different nucleosomal repeat lengths

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

The superstructure of chromatin and its condensation mechanism. II. Theoretical analysis of the X-ray scattering patterns and model calculations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Electrostatic mechanism of chromatin folding.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Electrostatic interactions in macromolecules: theory and applications

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Solenoidal model for superstructure in chromatin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Controlling the double helix

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408867102

Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408867102

Computational modeling predicts the structure and dynamics of chromatin fiber

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408867102

Constructing irregular surfaces to enclose macromolecular complexes for mesoscale modeling using the discrete surface charge optimization (DISCO) algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408867102

Internal motion of supercoiled DNA: brownian dynamics simulations of site juxtaposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408867102

Equation of State Calculations by Fast Computing Machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408867102

Role of histone tails in the conformation and interactions of nucleosome core particles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408867102

Modeling salt-mediated electrostatics of macromolecules: the discrete surface charge optimization algorithm and its application to the nucleosome

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Modeling chain folding in protein-constrained circular DNA.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

HYDRO: a computer program for the prediction of hydrodynamic properties of macromolecules

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Global statistics of protein sequences: implications for the origin, evolution, and prediction of structure

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1140479

Pulling chromatin fibers: computer simulations of direct physical micromanipulations

29 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408867102

Influence of nucleosome structure on the three-dimensional folding of idealized minichromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408867102

Frictional coefficients of multisubunit structures. I. Theory

21 January 2018

1 reference

12 December 2020

Higher order structure of chromatin: orientation of nucleosomes within the 30 nm chromatin solenoid is independent of species and spacer length

1 reference

12 December 2020

Dynamics and equilibria of nucleosomes at elevated ionic strength

1 reference

12 December 2020

Nucleosome core particle stability and conformational change. Effect of temperature, particle and NaCl concentrations, and crosslinking of histone H3 sulfhydryl groups

1 reference

12 December 2020

Structure of the 300A chromatin filament: X-ray diffraction from oriented samples

1 reference

12 December 2020

Homogeneous reconstituted oligonucleosomes, evidence for salt-dependent folding in the absence of histone H1

1 reference

12 December 2020

The mechanism of nucleosome assembly onto oligomers of the sea urchin 5 S DNA positioning sequence

1 reference

12 December 2020

Role of the histone "tails" in the folding of oligonucleosomes depleted of histone H1

1 reference

12 December 2020

Major role of the histones H3-H4 in the folding of the chromatin fiber

1 reference

12 December 2020

Structure and function of the core histone N-termini: more than meets the eye

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0408867102

1 reference

29 July 2017

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29 July 2017

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