(Q33837392)

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MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

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Europe PubMed Central

MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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inferred from title

Antony Le Béchec

object named as

Antony Le Béchec

1

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Elodie Portales-Casamar

object named as

Elodie Portales-Casamar

2

0 references

Charles Theillet

object named as

Charles Theillet

8

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Wyeth Wasserman

object named as

Wyeth W Wasserman

9

0 references

author name string

Guillaume Vetter

3

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Michèle Moes

4

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Europe PubMed Central

PubMed publication ID

29 July 2017

Pierre-Joachim Zindy

5

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Anne Saumet

6

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

David Arenillas

7

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Charles-Henri Lecellier

10

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Evelyne Friederich

11

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Europe PubMed Central

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29 July 2017

publication date

4 March 2011

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Europe PubMed Central

PubMed publication ID

29 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

67

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

Transcriptional regulation of mammalian miRNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

microRNA evolution in a human transcription factor and microRNA regulatory network.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Checks and balances: E2F-microRNA crosstalk in cancer control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Transcriptional suppression of mir-29b-1/mir-29a promoter by c-Myc, hedgehog, and NF-kappaB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

miR-661 expression in SNAI1-induced epithelial to mesenchymal transition contributes to breast cancer cell invasion by targeting Nectin-1 and StarD10 messengers

1 reference

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4 July 2018

Regulation of mRNA translation and stability by microRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Posttranscriptional regulation of microRNA biogenesis in animals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-Seq profiling and network analysis

1 reference

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4 July 2018

PuTmiR: a database for extracting neighboring transcription factors of human microRNAs

1 reference

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4 July 2018

Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Taz-tead1 links cell-cell contact to zeb1 expression, proliferation, and dedifferentiation in retinal pigment epithelial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Mechanisms of transcription factor selectivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

On the detection and refinement of transcription factor binding sites using ChIP-Seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Epithelial-mesenchymal transitions in development and disease

1 reference

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4 July 2018

The EMT-activator ZEB1 promotes tumorigenicity by repressing stemness-inhibiting microRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information.

1 reference

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4 July 2018

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

1 reference

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4 July 2018

HHMD: the human histone modification database

1 reference

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4 July 2018

Regulation of miR-200 family microRNAs and ZEB transcription factors in ovarian cancer: evidence supporting a mesothelial-to-epithelial transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

miRGen 2.0: a database of microRNA genomic information and regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

TransmiR: a transcription factor-microRNA regulation database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

A high throughput experimental approach to identify miRNA targets in human cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

System biology of gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Clustered microRNAs' coordination in regulating protein-protein interaction network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

The basics of epithelial-mesenchymal transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

MicroRNA and stem cell regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Analyzing miRNA co-expression networks to explore TF-miRNA regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Time-resolved analysis of transcriptional events during SNAI1-triggered epithelial to mesenchymal transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

MicroRNA-200c mitigates invasiveness and restores sensitivity to microtubule-targeting chemotherapeutic agents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

The interplay between transcription factors and microRNAs in genome-scale regulatory networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

ASTD: The Alternative Splicing and Transcript Diversity database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Chromatin structure analyses identify miRNA promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

NF-kappaB-YY1-miR-29 regulatory circuitry in skeletal myogenesis and rhabdomyosarcoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

MicroRNAs as regulators of epithelial-mesenchymal transition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Non-coding RNAs take centre stage in epithelial-to-mesenchymal transition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Mediators of reprogramming: transcription factors and transitions through mitosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

A reciprocal repression between ZEB1 and members of the miR-200 family promotes EMT and invasion in cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

M@IA: a modular open-source application for microarray workflow and integrative datamining.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

The microRNA.org resource: targets and expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Widespread microRNA repression by Myc contributes to tumorigenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

miRBase: tools for microRNA genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Global and local architecture of the mammalian microRNA-transcription factor regulatory network.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

oPOSSUM: integrated tools for analysis of regulatory motif over-representation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals

1 reference

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4 July 2018

An E2F/miR-20a autoregulatory feedback loop.

1 reference

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4 July 2018

CpGcluster: a distance-based algorithm for CpG-island detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3061897

4 July 2018

Canalization of development by microRNAs

1 reference

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4 July 2018

miRBase: microRNA sequences, targets and gene nomenclature

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4 July 2018

Inhibition of translational initiation by Let-7 MicroRNA in human cells

1 reference

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4 July 2018

Combinatorial microRNA target predictions

1 reference

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4 July 2018

Applied bioinformatics for the identification of regulatory elements

1 reference

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4 July 2018

Prediction of nuclear hormone receptor response elements.

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The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences

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21 January 2018

UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome

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21 January 2018

Rho-associated kinases play a role in endocardial cell differentiation and migration.

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21 January 2018

CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences

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12 December 2020

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10.1186/1471-2105-12-67

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Europe PubMed Central

PubMed publication ID

29 July 2017

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journals/bmcbi/BechecPVMZSATWLF11

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DBLP Dataset 2021-01-02

28 January 2021

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PMC publication ID

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Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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