(Q37675313)

21 August 2017

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title

Mechanisms of transcription factor selectivity (English)

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21 August 2017

5

Ruth Nussinov

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21 August 2017

2

Chung-Jung Tsai

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21 August 2017

3

Buyong Ma

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21 August 2017

4

Buyong Ma

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21 August 2017

1

Yongping Pan

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21 August 2017

publication date

13 January 2010

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21 August 2017

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21 August 2017

volume

26

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21 August 2017

issue

2

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21 August 2017

page(s)

75-83

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Normal and cancer-related functions of the p160 steroid receptor co-activator (SRC) family

21 August 2017

cites work

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12 December 2020

DNA energy landscapes via calorimetric detection of microstate ensembles of metastable macrostates and triplet repeat diseases

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12 December 2020

Insight into the structural basis of pro- and antiapoptotic p53 modulation by ASPP proteins

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12 December 2020

Structure of the intact PPAR-gamma-RXR- nuclear receptor complex on DNA

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12 December 2020

The role of chromatin during transcription

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12 December 2020

p53 Pre- and post-binding event theories revisited: stresses reveal specific and dynamic p53-binding patterns on the p21 gene promoter

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12 December 2020

Folding funnels, binding funnels, and protein function

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12 December 2020

A combinatorial mechanism for determining the specificity of E2F activation and repression

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12 December 2020

Chromatin structure can strongly facilitate enhancer action over a distance

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12 December 2020

The role of dynamic conformational ensembles in biomolecular recognition

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12 December 2020

Scaling laws in the functional content of genomes

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12 December 2020

FACT and the reorganized nucleosome

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12 December 2020

Visualization of a missing link in retrovirus capsid assembly

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12 December 2020

Mechanistic insights into phosphoprotein-binding FHA domains.

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12 December 2020

High-resolution DNA-binding specificity analysis of yeast transcription factors

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12 December 2020

Mechanism of the nuclear receptor molecular switch

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12 December 2020

Transcription factories: gene expression in unions?

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12 December 2020

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12 December 2020

Transcription regulation and animal diversity

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12 December 2020

Is allostery an intrinsic property of all dynamic proteins?

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12 December 2020

The role of DNA response elements as allosteric modulators of steroid receptor function

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12 December 2020

Allosteric Effects Govern Nuclear Receptor Action: DNA Appears as a Player

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12 December 2020

DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

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12 December 2020

Allosteric effects of Pit-1 DNA sites on long-term repression in cell type specification

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12 December 2020

Hox networks and the origins of motor neuron diversity

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12 December 2020

SH3 domains of Grb2 adaptor bind to PXpsiPXR motifs within the Sos1 nucleotide exchange factor in a discriminate manner

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12 December 2020

A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response.

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12 December 2020

Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast

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12 December 2020

Steroid hormone pulsing drives cyclic gene expression

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12 December 2020

BIOCHEMISTRY: How Do Proteins Interact?

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12 December 2020

Transcriptional control of human p53-regulated genes

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12 December 2020

Cataloging and organizing p73 interactions in cell cycle arrest and apoptosis

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12 December 2020

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

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12 December 2020

Macromolecular complexes as depots for releasable regulatory proteins.

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12 December 2020

Prediction of nuclear hormone receptor response elements.

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12 December 2020

Folding funnels and binding mechanisms

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12 December 2020

Discovery of novel tumor suppressor p53 response elements using information theory

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12 December 2020

The origin of allosteric functional modulation: multiple pre-existing pathways

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12 December 2020

Interaction of the glucocorticoid receptor with the chromatin landscape

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12 December 2020

Chromatin immunoprecipitation-on-chip reveals stress-dependent p53 occupancy in primary normal cells but not in established cell lines.

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12 December 2020

Multifactorial regulation of a hox target gene

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12 December 2020

Signal Transduction and the Control of Gene Expression

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12 December 2020

The basal initiation machinery: beyond the general transcription factors

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12 December 2020

The TRANSFAC system on gene expression regulation.

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12 December 2020

Protein states and proteinquakes

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12 December 2020

Extensive low-affinity transcriptional interactions in the yeast genome

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12 December 2020

The Energy Landscapes and Motions of Proteins

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12 December 2020

A reexamination of information theory-based methods for DNA-binding site identification

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12 December 2020

A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors

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12 December 2020

Structured disorder and conformational selection

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12 December 2020

Amplification of signaling via cellular allosteric relay and protein disorder

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12 December 2020

Structure and evolution of transcriptional regulatory networks

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12 December 2020

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

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12 December 2020

Diversity and complexity in DNA recognition by transcription factors

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12 December 2020

Unified nomenclature for the winged helix/forkhead transcription factors

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12 December 2020

Environment-specific combinatorial cis-regulation in synthetic promoters

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12 December 2020

Estrogen response elements function as allosteric modulators of estrogen receptor conformation

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12 December 2020

Mechanisms of regulatory diversity within the p53 transcriptional network

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12 December 2020

Comparative binding of p53 to its promoter and DNA recognition elements.

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12 December 2020

DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies

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12 December 2020

Sequence logos: a new way to display consensus sequences

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12 December 2020

Generic binding sites, generic DNA-binding domains: where does specific promoter recognition come from?

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12 December 2020

How do transcription factors select specific binding sites in the genome?

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12 December 2020

Understanding the words of chromatin regulation

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12 December 2020

Chromosome crosstalk in three dimensions.

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12 December 2020

Protein allostery, signal transmission and dynamics: a classification scheme of allosteric mechanisms

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12 December 2020

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

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12 December 2020

Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family

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12 December 2020

Folding and binding cascades: shifts in energy landscapes

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12 December 2020

Transcription dynamics

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12 December 2020

Structure and function of the phosphothreonine-specific FHA domain.

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12 December 2020

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.

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12 December 2020

Effects of CpG methylation on recognition of DNA by the tumour suppressor p53.

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12 December 2020

A global map of p53 transcription-factor binding sites in the human genome

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12 December 2020

Trapping moving targets with small molecules

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12 December 2020

Dynamics and function of compact nucleosome arrays

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12 December 2020

Cooperativity dominates the genomic organization of p53-response elements: a mechanistic view

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12 December 2020

Kinome signaling through regulated protein-protein interactions in normal and cancer cells

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12 December 2020

DNA-binding specificity and in vivo targets of Caenorhabditis elegans nuclear factor I.

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12 December 2020

Allosteric modulation of DNA by small molecules

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12 December 2020

What controls nucleosome positions?

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12 December 2020

Sequence analysis of p53 response-elements suggests multiple binding modes of the p53 tetramer to DNA targets

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12 December 2020

Sequence features of DNA binding sites reveal structural class of associated transcription factor

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12 December 2020

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

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12 December 2020

The expanding universe of p53 targets

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12 December 2020

Conservation of enhancer location in divergent insects

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12 December 2020

Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA.

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12 December 2020

Two classes of androgen receptor elements mediate cooperativity through allosteric interactions

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12 December 2020

Redefining the p53 response element

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12 December 2020

Ultradian hormone stimulation induces glucocorticoid receptor-mediated pulses of gene transcription.

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12 December 2020

10.1016/J.TIG.2009.12.003

Identifiers

DOI

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21 August 2017

0 references

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